Browse Element(s) Details


OsAffx.17654.1.S1_at

Description tigr:9633.m00939
TID=OsAffx.17654.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=SWIM zinc finger, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1076010/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g10720OsAffx.26816.1.S1_at11/115+5884727..5885110hypothetical protein
LOC_Os05g10730Os.7826.2.A1_at11/115+5887293..5893730multidrug resistance associated protein 1, putative, expressed
LOC_Os05g10740Os.7826.1.S1_a_at11/115+5893355..5896224Pollen-specific protein SF21, putative, expressed
LOC_Os05g10750NANA5+5903561..5904178hypothetical protein
LOC_Os05g10760OsAffx.17654.1.S1_at10/115+5908982..5912701transposon protein, putative, unclassified, expressed
LOC_Os05g10760OsAffx.17654.3.S1_x_at9/115+5908982..5912701transposon protein, putative, unclassified, expressed
LOC_Os05g10770Os.10868.1.S1_at11/115+5919475..5926166jmjC domain containing protein, expressed
LOC_Os05g10780OsAffx.14625.1.S1_at11/115+5933863..59355581-aminocyclopropane-1-carboxylate synthase 7, putative
LOC_Os05g10780OsAffx.14625.1.S1_x_at11/115+5933863..59355581-aminocyclopropane-1-carboxylate synthase 7, putative
LOC_Os05g10780Os.45926.1.S1_s_at2/115+5933863..59355581-aminocyclopropane-1-carboxylate synthase 7, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17654.1.S1_at--611--5591Chr05:5911947..5911971 (25 bp)
GAAATTGGACCGATAAACAGCACAA
LOC_Os05g10760
OsAffx.17654.1.S1_at--342--2351Chr05:5911982..5912006 (25 bp)
AAAGCACCGGCTAAAGTTACTGATG
LOC_Os05g10760
OsAffx.17654.1.S1_at--244--8871NONE
TGATGCACATCAATCTCCTACCGAA
NONE
OsAffx.17654.1.S1_at--738--5372Chr09:6704318..6704340 (23 bp)
GAAGCACAAACTCAATTAGCTGCAG
NONE
OsAffx.17654.1.S1_at--318--152Chr09:6704330..6704354 (25 bp)
ATTAGCTGCAGAGAATTGTTGTAGA
NONE
OsAffx.17654.1.S1_at--293--6512Chr09:6704377..6704401 (25 bp)
GATATGAGTTCATCAGTAGCTACAC
NONE
OsAffx.17654.1.S1_at--994--9992Chr09:6704393..6704412 (20 bp)
TAGCTACACTGAACTACTGACGAGT
NONE
OsAffx.17654.1.S1_at--1032--5471Chr05:5912220..5912609 (25 bp)
GAACTACTGACGAGTGTCTCTGACA
LOC_Os05g10760
OsAffx.17654.1.S1_at--1076--5772Chr09:6704794..6704815 (22 bp)
GACGAGTGTCTCTGACAACTACCAA
NONE
OsAffx.17654.1.S1_at--1072--5612Chr09:6704804..6704828 (25 bp)
GACAACTACCAACTTGCACTTAACA
NONE
OsAffx.17654.1.S1_at--707--2011Chr05:5912623..5912647 (25 bp)
ACTTAACAAACAGAGCAGTGGGCAG
LOC_Os05g10760
Target Sequence 
GAAATTGGACCGATAAACAGCACAAGAAAAACAAAAAAGCACCGGCTAAAGTTACTGATGCACATCAATCTCCTACCGAA
CAAGAAGCACAAACTCAATTAGCTGCAGAGAATTGTTGTAGAAGAAATGAGAACGATTTTCAGGGATATGAGTTCATCAG
TAGCTACACTGAACTACTGACGAGTGTCTCTGACAACTACCAACTTGCACTTAACAAACAGAGCAGTGGGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17654.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis