Browse Element(s) Details


OsAffx.14626.1.S1_at

Description tigr:9633.m00942
TID=OsAffx.14626.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1079010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g10770Os.10868.1.S1_at11/115+5919475..5926166jmjC domain containing protein, expressed
LOC_Os05g10780OsAffx.14625.1.S1_at11/115+5933863..59355581-aminocyclopropane-1-carboxylate synthase 7, putative
LOC_Os05g10780OsAffx.14625.1.S1_x_at11/115+5933863..59355581-aminocyclopropane-1-carboxylate synthase 7, putative
LOC_Os05g10780Os.45926.1.S1_s_at2/115+5933863..59355581-aminocyclopropane-1-carboxylate synthase 7, putative
LOC_Os05g10790OsAffx.14626.1.S1_at10/115+5940307..5942141hypothetical protein
LOC_Os05g10800Os.52890.1.S1_at11/115+5944167..5945668expressed protein
LOC_Os05g10810Os.17391.1.S1_at11/115+5951263..5957940MBOAT family protein, expressed
LOC_Os05g10820OsAffx.26817.1.S1_at11/115+5964039..5964332hypothetical protein
LOC_Os05g10830OsAffx.26818.1.S1_x_at11/115+5965397..5966166Germin-like protein subfamily 1 member 11 precursor, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14626.1.S1_at--103--10171Chr05:5942054..5942078 (25 bp)
TATAGCAGAGGGTGCCAGCGCAAAA
LOC_Os05g10790
OsAffx.14626.1.S1_at--73--7851Chr05:5941006..5941030 (25 bp)
GGTACATGGGTAACATCATATCGTT
LOC_Os05g10790
OsAffx.14626.1.S1_at--662--10151Chr05:5940988..5941012 (25 bp)
TATCGTTTTATCTCCCCAAGATGAA
LOC_Os05g10790
OsAffx.14626.1.S1_at--9--10371Chr05:5940981..5941005 (25 bp)
TTATCTCCCCAAGATGAAAGGCAAT
LOC_Os05g10790
OsAffx.14626.1.S1_at--587--6311Chr05:5940969..5940993 (25 bp)
GATGAAAGGCAATGACACCTTTGCT
LOC_Os05g10790
OsAffx.14626.1.S1_at--60--5651Chr05:5940956..5940980 (25 bp)
GACACCTTTGCTTCTGAAGGTGACA
LOC_Os05g10790
OsAffx.14626.1.S1_at--919--5311Chr05:5940941..5940965 (25 bp)
GAAGGTGACAAACTCTCTACATTAC
LOC_Os05g10790
OsAffx.14626.1.S1_at--1066--5611Chr05:5940935..5940959 (25 bp)
GACAAACTCTCTACATTACGAGTGA
LOC_Os05g10790
OsAffx.14626.1.S1_at--880--1331NONE
AGAGAGCTTTTTCATGACTATAAAT
NONE
OsAffx.14626.1.S1_at--1050--4951Chr05:5940372..5940396 (25 bp)
GCATACATGCATATAGTCCTAATTG
LOC_Os05g10790
OsAffx.14626.1.S1_at--154--2291Chr05:5940337..5940361 (25 bp)
AAATGGTACAAAGCGGCTACATGCA
LOC_Os05g10790
Target Sequence 
TATAGCAGAGGGTGCCAGCGCAAAAGAAAGAGGAAAGAAGAGAGGTACATGGGTAACATCATATCGTTTTATCTCCCCAA
GATGAAAGGCAATGACACCTTTGCTTCTGAAGGTGACAAACTCTCTACATTACGAGTGAAAAGAGAGCTTTTTCATGACT
ATAAATTAGCATACATGCATATAGTCCTAATTGGGGTTTCTAGAAATGGTACAAAGCGGCTACATGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14626.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis