Browse Element(s) Details


Os.52890.1.S1_at

Description gb:AK069743.1
DB_XREF= gi:32979767
TID=Os.52890.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52890 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023028G13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023028G13, full insert sequence.
FL= gb:AK069743.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1080011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g10770Os.10868.1.S1_at11/115+5919475..5926166jmjC domain containing protein, expressed
LOC_Os05g10780OsAffx.14625.1.S1_at11/115+5933863..59355581-aminocyclopropane-1-carboxylate synthase 7, putative
LOC_Os05g10780OsAffx.14625.1.S1_x_at11/115+5933863..59355581-aminocyclopropane-1-carboxylate synthase 7, putative
LOC_Os05g10780Os.45926.1.S1_s_at2/115+5933863..59355581-aminocyclopropane-1-carboxylate synthase 7, putative
LOC_Os05g10790OsAffx.14626.1.S1_at10/115+5940307..5942141hypothetical protein
LOC_Os05g10800Os.52890.1.S1_at11/115+5944167..5945668expressed protein
LOC_Os05g10810Os.17391.1.S1_at11/115+5951263..5957940MBOAT family protein, expressed
LOC_Os05g10820OsAffx.26817.1.S1_at11/115+5964039..5964332hypothetical protein
LOC_Os05g10830OsAffx.26818.1.S1_x_at11/115+5965397..5966166Germin-like protein subfamily 1 member 11 precursor, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52890.1.S1_at--1052--5151Chr05:5945252..5945276 (25 bp)
GCAAGAACAGGAAGTCCGTCCGGTT
LOC_Os05g10800
Os.52890.1.S1_at--502--7791Chr05:5945408..5945432 (25 bp)
GGTGCCTGTTCCGATGCTGCTGGCC
LOC_Os05g10800
Os.52890.1.S1_at--134--4691Chr05:5945498..5945522 (25 bp)
GCGGCGAGAATTGCCGGTGCTAAAA
LOC_Os05g10800
Os.52890.1.S1_at--892--3971Chr05:5945512..5945536 (25 bp)
CGGTGCTAAAATTTGGCGGGAGATT
LOC_Os05g10800
Os.52890.1.S1_at--1109--3591Chr05:5945542..5945566 (25 bp)
CATTGCGCGCCAATGTAGGGCGATT
LOC_Os05g10800
Os.52890.1.S1_at--465--1071Chr05:5945558..5945582 (25 bp)
AGGGCGATTTGAACGCGATCTTGGT
LOC_Os05g10800
Os.52890.1.S1_at--568--4631Chr05:5945572..5945596 (25 bp)
GCGATCTTGGTTTTGAATGTGTTGC
LOC_Os05g10800
Os.52890.1.S1_at--273--10271Chr05:5945583..5945607 (25 bp)
TTTGAATGTGTTGCGATGTTGTTGA
LOC_Os05g10800
Os.52890.1.S1_at--502--6271Chr05:5945597..5945621 (25 bp)
GATGTTGTTGAAGTGAACCGACCAG
LOC_Os05g10800
Os.52890.1.S1_at--348--8991Chr05:5945610..5945634 (25 bp)
TGAACCGACCAGAATCTGCGTGTAT
LOC_Os05g10800
Os.52890.1.S1_at--533--471Chr05:5945623..5945647 (25 bp)
ATCTGCGTGTATGTAGACAAGGTTT
LOC_Os05g10800
Target Sequence 
GCAAGAACAGGAAGTCCGTCCGGTTCGCCCCCGACGCCGAGATCGTCTCCGGCGAGATCACCAACCCCTCCGCCGTCTTC
CCCACGGAGGCGGCGGCGCCGGCGACGGAAGGGAAGGAGGCGGCGAAGAGCCCGGACGCGGCGGCGCAGGGAGGGTGGTG
CCTGTTCCGATGCTGCTGGCCGTCGCCGCCGTCGGTGTGGTGGCCTCGATGCGGGTGCGGCGGCGGCTGCGGCGTGTTCT
GCTGCGGCGGCGAGAATTGCCGGTGCTAAAATTTGGCGGGAGATTGGGGGCATTGCGCGCCAATGTAGGGCGATTTGAAC
GCGATCTTGGTTTTGAATGTGTTGCGATGTTGTTGAAGTGAACCGACCAGAATCTGCGTGTATGTAGACAAGGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52890.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis