Browse Element(s) Details


OsAffx.26817.1.S1_at

Description tigr:9633.m00945
TID=OsAffx.26817.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1082011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g10790OsAffx.14626.1.S1_at10/115+5940307..5942141hypothetical protein
LOC_Os05g10800Os.52890.1.S1_at11/115+5944167..5945668expressed protein
LOC_Os05g10810Os.17391.1.S1_at11/115+5951263..5957940MBOAT family protein, expressed
LOC_Os05g10820OsAffx.26817.1.S1_at11/115+5964039..5964332hypothetical protein
LOC_Os05g10830OsAffx.26818.1.S1_x_at11/115+5965397..5966166Germin-like protein subfamily 1 member 11 precursor, putative
LOC_Os05g10840Os.31977.1.S1_at11/115+5976088..5979913calmodulin-binding family protein, putative, expressed
LOC_Os05g10850OsAffx.26819.1.S1_at11/115+5989032..5989543hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26817.1.S1_at--671--6151Chr05:5964274..5964298 (25 bp)
GAGGTCACGGGTGCTCTGTGCCGGA
LOC_Os05g10820
OsAffx.26817.1.S1_at--1011--3771Chr05:5964261..5964285 (25 bp)
CTCTGTGCCGGATGGGCGGGAGGAC
LOC_Os05g10820
OsAffx.26817.1.S1_at--183--6191Chr05:5964218..5964242 (25 bp)
GAGGACGACGATGCCTGCGGAGATG
LOC_Os05g10820
OsAffx.26817.1.S1_at--659--4051Chr05:5964210..5964234 (25 bp)
CGATGCCTGCGGAGATGGTGACGAC
LOC_Os05g10820
OsAffx.26817.1.S1_at--267--8371Chr05:5964174..5964198 (25 bp)
GGCGCGCTTGGATCCGGCAGTCCCA
LOC_Os05g10820
OsAffx.26817.1.S1_at--651--4931Chr05:5964169..5964193 (25 bp)
GCTTGGATCCGGCAGTCCCATGCTT
LOC_Os05g10820
OsAffx.26817.1.S1_at--807--7971Chr05:5964165..5964189 (25 bp)
GGATCCGGCAGTCCCATGCTTGGAT
LOC_Os05g10820
OsAffx.26817.1.S1_at--717--551Chr05:5964163..5964187 (25 bp)
ATCCGGCAGTCCCATGCTTGGATCT
LOC_Os05g10820
OsAffx.26817.1.S1_at--367--3931Chr05:5964160..5964184 (25 bp)
CGGCAGTCCCATGCTTGGATCTGGC
LOC_Os05g10820
OsAffx.26817.1.S1_at--167--5031Chr05:5964158..5964182 (25 bp)
GCAGTCCCATGCTTGGATCTGGCGC
LOC_Os05g10820
OsAffx.26817.1.S1_at--177--3451Chr05:5964157..5964181 (25 bp)
CAGTCCCATGCTTGGATCTGGCGCC
LOC_Os05g10820
Target Sequence 
GAGGTCACGGGTGCTCTGTGCCGGATGGGCGGGAGGACGGGGACGGCGATGGCAGCGAGGACGACGATGCCTGCGGAGAT
GGTGACGACGCTACGGCGGCGGCGCGCTTGGATCCGGCAGTCCCATGCTTGGATCTGGCGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26817.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis