Browse Element(s) Details


OsAffx.26819.1.S1_at

Description tigr:9633.m00948
TID=OsAffx.26819.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1085011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g10820OsAffx.26817.1.S1_at11/115+5964039..5964332hypothetical protein
LOC_Os05g10830OsAffx.26818.1.S1_x_at11/115+5965397..5966166Germin-like protein subfamily 1 member 11 precursor, putative
LOC_Os05g10840Os.31977.1.S1_at11/115+5976088..5979913calmodulin-binding family protein, putative, expressed
LOC_Os05g10850OsAffx.26819.1.S1_at11/115+5989032..5989543hypothetical protein
LOC_Os05g10860OsAffx.26820.1.S1_at10/115+5994345..5996370hypothetical protein
LOC_Os05g10870NANA5+5999516..6005529retrotransposon protein, putative, unclassified
LOC_Os05g10880Os.31312.1.S1_at1/115+6005985..6006612retrotransposon protein, putative, unclassified
LOC_Os05g10890NANA5+6013510..6018549retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26819.1.S1_at--251--3371Chr05:5989259..5989283 (25 bp)
CACCGTCTGGGCGACAAAGAGCTTG
LOC_Os05g10850
OsAffx.26819.1.S1_at--1138--4011Chr05:5989256..5989280 (25 bp)
CGTCTGGGCGACAAAGAGCTTGGAA
LOC_Os05g10850
OsAffx.26819.1.S1_at--448--1371Chr05:5989242..5989266 (25 bp)
AGAGCTTGGAAACGCCAACGCCGAA
LOC_Os05g10850
OsAffx.26819.1.S1_at--183--8531Chr05:5989236..5989260 (25 bp)
TGGAAACGCCAACGCCGAAGAAAGT
LOC_Os05g10850
OsAffx.26819.1.S1_at--703--1811Chr05:5989231..5989255 (25 bp)
ACGCCAACGCCGAAGAAAGTGGACA
LOC_Os05g10850
OsAffx.26819.1.S1_at--126--2751Chr05:5989219..5989243 (25 bp)
AAGAAAGTGGACATGGGCACCGGCC
LOC_Os05g10850
OsAffx.26819.1.S1_at--1146--7771Chr05:5989194..5989218 (25 bp)
GGTCCTCGGTGTCCCACTTGGTGCA
LOC_Os05g10850
OsAffx.26819.1.S1_at--736--3311Chr05:5989180..5989204 (25 bp)
CACTTGGTGCACTTGTGGAGCTCGC
LOC_Os05g10850
OsAffx.26819.1.S1_at--545--3611Chr05:5989178..5989202 (25 bp)
CTTGGTGCACTTGTGGAGCTCGCCG
LOC_Os05g10850
OsAffx.26819.1.S1_at--26--1671Chr05:5989129..5989153 (25 bp)
ACCACGGCGGTTGCCAGCGCCACGA
LOC_Os05g10850
OsAffx.26819.1.S1_at--505--5791Chr05:5989106..5989130 (25 bp)
GACGACAAGCGTCGTCTCCGCAACG
LOC_Os05g10850
Target Sequence 
CACCGTCTGGGCGACAAAGAGCTTGGAAACGCCAACGCCGAAGAAAGTGGACATGGGCACCGGCCGGTCCTCGGTGTCCC
ACTTGGTGCACTTGTGGAGCTCGCCGGCGGTGCCCTCCACGATGGCAACCACCACGGCGGTTGCCAGCGCCACGACGACA
AGCGTCGTCTCCGCAACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26819.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis