Browse Element(s) Details


Os.31977.1.S1_at

Description gb:AK106389.1
DB_XREF= gi:32991598
TID=Os.31977.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31977 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-102-E10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-102-E10, full insert sequence.
FL= gb:AK106389.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1084011/11calmodulin-binding family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g10810Os.17391.1.S1_at11/115+5951263..5957940MBOAT family protein, expressed
LOC_Os05g10820OsAffx.26817.1.S1_at11/115+5964039..5964332hypothetical protein
LOC_Os05g10830OsAffx.26818.1.S1_x_at11/115+5965397..5966166Germin-like protein subfamily 1 member 11 precursor, putative
LOC_Os05g10840Os.31977.1.S1_at11/115+5976088..5979913calmodulin-binding family protein, putative, expressed
LOC_Os05g10850OsAffx.26819.1.S1_at11/115+5989032..5989543hypothetical protein
LOC_Os05g10860OsAffx.26820.1.S1_at10/115+5994345..5996370hypothetical protein
LOC_Os05g10870NANA5+5999516..6005529retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31977.1.S1_at--347--2771Chr05:5976572..5976596 (25 bp)
AAGACGAGCACAAGGCGACCTCCTC
LOC_Os05g10840
Os.31977.1.S1_at--794--5031Chr05:5976513..5976537 (25 bp)
GCAGAGAACCACCTGCCGTGCAGGT
LOC_Os05g10840
Os.31977.1.S1_at--207--971Chr05:5976440..5976464 (25 bp)
AGGACCTGCAGTCGAGGGCGCTGGA
LOC_Os05g10840
Os.31977.1.S1_at--790--4251Chr05:5976326..5976350 (25 bp)
CCGGGATGATACTGTCGCCGCGGCT
LOC_Os05g10840
Os.31977.1.S1_at--71--9191Chr05:5976260..5976284 (25 bp)
TGCCGGACTTCAAGAGGAGCAGATT
LOC_Os05g10840
Os.31977.1.S1_at--57--5031Chr05:5976235..5976259 (25 bp)
GCAGTGACACTGAAACGAAATTTTT
LOC_Os05g10840
Os.31977.1.S1_at--298--1191Chr05:5976195..5976219 (25 bp)
AGTAGTTTAGTTTAGCTGATGATGA
LOC_Os05g10840
Os.31977.1.S1_at--728--10331Chr05:5976165..5976189 (25 bp)
TTTAGAGTAATAACAGCTGGTCCAG
LOC_Os05g10840
Os.31977.1.S1_at--622--3391Chr05:5976152..5976176 (25 bp)
CAGCTGGTCCAGAAATTTTGTGAGG
LOC_Os05g10840
Os.31977.1.S1_at--325--5311Chr05:5976127..5976151 (25 bp)
GAAGGACAGTGATTCTTTGCTGCTA
LOC_Os05g10840
Os.31977.1.S1_at--844--10551Chr05:5976115..5976139 (25 bp)
TTCTTTGCTGCTAGGGAGAATTCAG
LOC_Os05g10840
Target Sequence 
AAGACGAGCACAAGGCGACCTCCTCGTCGGCGGCGAGCACCACCGCCGCCGCCGCCGCCGCAGAGAACCACCTGCCGTGC
AGGTGGTCGACGGGGACGGGGCCGAGGATCCGGTGCGTGCGCGACTACCCGCAGGACCTGCAGTCGAGGGCGCTGGAGCA
CGTCAACCTGTCGCCGCGCCTCGCCGCCGCCGGGGTGGCGCCGGCGACGAGGAAGAGGGACCCGGTGCCGTCGCCGCGGC
CGAGCCCCGGGATGATACTGTCGCCGCGGCTGGCCTCCGTGGGCTTCCGGCCGCCGGTGGTGGCGCTCACGCTGCCGGAC
TTCAAGAGGAGCAGATTGCAGTGACACTGAAACGAAATTTTTTGGTTAATTTTTTTTAGTAGTTTAGTTTAGCTGATGAT
GAACAGGTTTAGAGTAATAACAGCTGGTCCAGAAATTTTGTGAGGGAAGGACAGTGATTCTTTGCTGCTAGGGAGAATTC
AG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31977.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis