Browse Element(s) Details


Os.17391.1.S1_at

Description gb:CB660600
DB_XREF= gi:29664325
DB_XREF=OSJNEd02I18.r
CLONE=OSJNEd02I18
TID=Os.17391.1
CNT=22
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.17391 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_179535.1 (A.thaliana) diacylglycerol O-acyltransferase (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1081011/11MBOAT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g10780OsAffx.14625.1.S1_at11/115+5933863..59355581-aminocyclopropane-1-carboxylate synthase 7, putative
LOC_Os05g10780OsAffx.14625.1.S1_x_at11/115+5933863..59355581-aminocyclopropane-1-carboxylate synthase 7, putative
LOC_Os05g10780Os.45926.1.S1_s_at2/115+5933863..59355581-aminocyclopropane-1-carboxylate synthase 7, putative
LOC_Os05g10790OsAffx.14626.1.S1_at10/115+5940307..5942141hypothetical protein
LOC_Os05g10800Os.52890.1.S1_at11/115+5944167..5945668expressed protein
LOC_Os05g10810Os.17391.1.S1_at11/115+5951263..5957940MBOAT family protein, expressed
LOC_Os05g10820OsAffx.26817.1.S1_at11/115+5964039..5964332hypothetical protein
LOC_Os05g10830OsAffx.26818.1.S1_x_at11/115+5965397..5966166Germin-like protein subfamily 1 member 11 precursor, putative
LOC_Os05g10840Os.31977.1.S1_at11/115+5976088..5979913calmodulin-binding family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0007568biological_processaging
GO:0009409biological_processresponse to cold
GO:0009651biological_processresponse to salt stress
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009749biological_processresponse to glucose stimulus
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0010029biological_processregulation of seed germination
GO:0010030biological_processpositive regulation of seed germination
GO:0019432biological_processtriacylglycerol biosynthesis
GO:0045995biological_processregulation of embryonic development
GO:0009941cellular_componentchloroplast envelope
GO:0016020cellular_componentmembrane
GO:0004144molecular_functiondiacylglycerol O-acyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17391.1.S1_at--546--9191Chr05:5957469..5957493 (25 bp)
TGCCTTCTCCTGTACTATCATGATG
LOC_Os05g10810
Os.17391.1.S1_at--178--9851Chr05:5957520..5957544 (25 bp)
TAAATGCGTGTTGCCATCTTTTTCC
LOC_Os05g10810
Os.17391.1.S1_at--308--2491Chr05:5957601..5957625 (25 bp)
AACAGCATGATTCCCAACGGTGTGG
LOC_Os05g10810
Os.17391.1.S1_at--424--1651Chr05:5957629..5957653 (25 bp)
AGCCAACCTTCCTGTTATTCTATTT
LOC_Os05g10810
Os.17391.1.S1_at--903--111Chr05:5957645..5957669 (25 bp)
ATTCTATTTTCTTGGCTGTGGTGTA
LOC_Os05g10810
Os.17391.1.S1_at--841--351Chr05:5957713..5957737 (25 bp)
ATAAGCATCTGTCATTCTGTCTGGC
LOC_Os05g10810
Os.17391.1.S1_at--116--8391Chr05:5957735..5957759 (25 bp)
GGCGACGTTCTCCTTATTAATGTGT
LOC_Os05g10810
Os.17391.1.S1_at--49--431Chr05:5957789..5957813 (25 bp)
ATCTTGAATCTGTTATGCCTCGACG
LOC_Os05g10810
Os.17391.1.S1_at--245--9151Chr05:5957804..5957828 (25 bp)
TGCCTCGACGAACATAATCCTTTTG
LOC_Os05g10810
Os.17391.1.S1_at--972--7991Chr05:5957869..5957893 (25 bp)
GGATGTACGATTTCGTCTGCCATAT
LOC_Os05g10810
Os.17391.1.S1_at--484--7171Chr05:5957883..5957907 (25 bp)
GTCTGCCATATATCACGCTCATATT
LOC_Os05g10810
Target Sequence 
TGCCTTCTCCTGTACTATCATGATGTGATGAACAGGATTGAGAAGGCAAGATAAATGCGTGTTGCCATCTTTTTCCTNTG
TTTCATTTTGTACCAGCAGAAGCACAAGCAATAATCCACATGCTAGCCATAAAACAGCATGATTCCCAACGGTGTGGTAC
AGCCAACCTTCCTGTTATTCTATTTTCTTGGCTGTGGTGTAGATTTAGTTTTNAACTTGTGGCTAACCGCAGGAATGCCT
GTAGATAAGCATCTGTCATTCTGTCTGGCGACGTTCTCCTTATTAATGTGTAGATGTAGAACTGTTTCCGAAAACTATAT
ATCTTGAATCTGTTATGCCTCGACGAACATAATCCTTTTGTTAAGCTTAGTTGGTACAGTCTAGAAAGGATAAGAGTCGT
GGATGTACGATTTCGTCTGCCATATATCACGCTCATATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17391.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis