Browse Element(s) Details


Os.45934.3.S1_at

Description gb:AK064472.1
DB_XREF= gi:32974490
TID=Os.45934.3
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.45934 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0671B11.30 (P0671B11.30), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-110-H06, full insert sequence.
FL= gb:AK064472.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0976011/11DIRP family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09700Os.45926.1.S1_s_at11/111+4998920..50025291-aminocyclopropane-1-carboxylate synthase 7, putative, expressed
LOC_Os01g09700Os.6034.1.S1_at11/111+4998920..50025291-aminocyclopropane-1-carboxylate synthase 7, putative, expressed
LOC_Os01g09700OsAffx.14625.1.S1_x_at5/111+4998920..50025291-aminocyclopropane-1-carboxylate synthase 7, putative, expressed
LOC_Os01g09710OsAffx.22161.1.S1_at11/111+5006850..5009197hypothetical protein
LOC_Os01g09720NANA1+5011411..5012058Dof domain, zinc finger family protein
LOC_Os01g09730Os.31630.1.S1_x_at11/111+5013081..5015453expressed protein
LOC_Os01g09730Os.31630.2.S1_at11/111+5013081..5015453expressed protein
LOC_Os01g09740Os.31630.3.S1_at11/111+5014695..5016887F-box family protein, putative, expressed
LOC_Os01g09750Os.24087.1.S1_at11/111+5017890..502250623S rRNA methyltransferase RumA family protein, expressed
LOC_Os01g09750OsAffx.22118.1.S1_at1/111+5017890..502250623S rRNA methyltransferase RumA family protein, expressed
LOC_Os01g09760Os.45934.3.S1_x_at11/111+5026959..5033985DIRP family protein, expressed
LOC_Os01g09760Os.45934.3.S1_at11/111+5026959..5033985DIRP family protein, expressed
LOC_Os01g09770Os.45934.1.S1_at6/111+5034225..5037500expressed protein
LOC_Os01g09780Os.17112.1.S1_at1/111+5042833..5043622NA
LOC_Os01g09790Os.33983.1.S1_at11/111+5049935..5052555IQ calmodulin-binding motif family protein, expressed
LOC_Os01g09800Os.27112.1.S1_at11/111+5057218..5062031Regulatory protein NPR1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45934.3.S1_at--485--6811Chr01:5033830..5033854 (25 bp)
GTTTTTAGTTTCATAGATTTCTCAA
LOC_Os01g09760
Os.45934.3.S1_at--26--10011Chr01:5033843..5033867 (25 bp)
TAGATTTCTCAATATGGTTTTAGGA
LOC_Os01g09760
Os.45934.3.S1_at--429--5291Chr01:5033866..5033890 (25 bp)
GAATGGAGGAATCGACATTCCAGTT
LOC_Os01g09760
Os.45934.3.S1_at--846--5251Chr01:5033874..5033898 (25 bp)
GAATCGACATTCCAGTTGTAGTTAA
LOC_Os01g09760
Os.45934.3.S1_at--350--4091Chr01:5033878..5033902 (25 bp)
CGACATTCCAGTTGTAGTTAATAAT
LOC_Os01g09760
Os.45934.3.S1_at--759--6751Chr01:5033894..5033918 (25 bp)
GTTAATAATAACGATTCCTACAGTC
LOC_Os01g09760
Os.45934.3.S1_at--1007--5231Chr01:5033921..5033945 (25 bp)
GAATACATTGTCCAGTTGATTCACA
LOC_Os01g09760
Os.45934.3.S1_at--856--2071Chr01:5033925..5033949 (25 bp)
ACATTGTCCAGTTGATTCACAGAGA
LOC_Os01g09760
Os.45934.3.S1_at--335--8711Chr01:5033929..5033953 (25 bp)
TGTCCAGTTGATTCACAGAGAACAC
LOC_Os01g09760
Os.45934.3.S1_at--583--6651Chr01:5033935..5033959 (25 bp)
GTTGATTCACAGAGAACACCATCTT
LOC_Os01g09760
Os.45934.3.S1_at--226--6571Chr01:5033938..5033962 (25 bp)
GATTCACAGAGAACACCATCTTGAT
LOC_Os01g09760
Target Sequence 
GTTTTTAGTTTCATAGATTTCTCAATATGGTTTTAGGAATGGAGGAATCGACATTCCAGTTGTAGTTAATAATAACGATT
CCTACAGTCNATGAATACATTGTCCAGTTGATTCACAGAGAACACCATCTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45934.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis