Browse Element(s) Details


Os.33983.1.S1_at

Description gb:AK073282.1
DB_XREF= gi:32983305
TID=Os.33983.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33983 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0671B11.33 (P0671B11.33), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033027F11, full insert sequence.
FL= gb:AK073282.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0979011/11IQ calmodulin-binding motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09760Os.45934.3.S1_x_at11/111+5026959..5033985DIRP family protein, expressed
LOC_Os01g09760Os.45934.3.S1_at11/111+5026959..5033985DIRP family protein, expressed
LOC_Os01g09770Os.45934.1.S1_at6/111+5034225..5037500expressed protein
LOC_Os01g09780Os.17112.1.S1_at1/111+5042833..5043622NA
LOC_Os01g09790Os.33983.1.S1_at11/111+5049935..5052555IQ calmodulin-binding motif family protein, expressed
LOC_Os01g09800Os.27112.1.S1_at11/111+5057218..5062031Regulatory protein NPR1, putative, expressed
LOC_Os01g09810OsAffx.10988.1.S1_at5/111+5070218..5071732hypothetical protein
LOC_Os01g09810Os.51226.1.S1_at1/111+5070218..5071732hypothetical protein
LOC_Os01g09820OsAffx.10988.1.S1_at2/111+5075929..5077169NA
LOC_Os01g09820Os.29072.1.S1_at1/111+5075929..5077169NA

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Gene Ontology Classification
GO idTypeName
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33983.1.S1_at--550--1651Chr01:5050451..5050475 (25 bp)
AGCGCATCAAAGCTCAGTCGATCTC
LOC_Os01g09790
Os.33983.1.S1_at--687--6411Chr01:5050432..5050456 (25 bp)
GATCTCGTCTCTGAGCACTGAATTG
LOC_Os01g09790
Os.33983.1.S1_at--255--2991Chr01:5050404..5050428 (25 bp)
AATGATGAGAGCTCGGCATCGTCAT
LOC_Os01g09790
Os.33983.1.S1_at--123--9431Chr01:5050377..5050401 (25 bp)
TCGTGCTTTGCTTCGACACCAATAT
LOC_Os01g09790
Os.33983.1.S1_at--1049--2491Chr01:5050128..5050152 (25 bp)
AACTTCTACCTCTCTAGGGTGTTTG
LOC_Os01g09790
Os.33983.1.S1_at--92--71Chr01:5050095..5050119 (25 bp)
ATTGCTCCATCCACAGGTTTTTCGA
LOC_Os01g09790
Os.33983.1.S1_at--603--7871Chr01:5050080..5050104 (25 bp)
GGTTTTTCGATGTCTTGCTGCTGCA
LOC_Os01g09790
Os.33983.1.S1_at--853--111Chr01:5050056..5050080 (25 bp)
ATTCTTGAGTTGTGTCTGTGTCGCC
LOC_Os01g09790
Os.33983.1.S1_at--929--8671Chr01:5050040..5050064 (25 bp)
TGTGTCGCCAATCTCATGTTCAACA
LOC_Os01g09790
Os.33983.1.S1_at--283--2511Chr01:5050019..5050043 (25 bp)
AACATCTTGTTGTCGAGTCATCCCA
LOC_Os01g09790
Os.33983.1.S1_at--894--771Chr01:5049985..5050009 (25 bp)
ATGTCCTCATTGTCAGTGGCAGTGT
LOC_Os01g09790
Target Sequence 
AGCGCATCAAAGCTCAGTCGATCTCGTCTCTGAGCACTGAATTGCACAATGATGAGAGCTCGGCATCGTCATCGTCGTGC
TTTGCTTCGACACCAATATCGTTCTCCACCTTTGTCACGACGGAGAAGACCGAGGACAGCATCAGGGCAAGGCCAAACTA
CATGAACATGACGGAGTCGATCAAGGCGAAGCGAAAGGCGTGTAATGCTCAAAGAACGACAGCAGGGAAACTGATGGAGG
ATAGGAAGGCCTCAGGTGTCGAGTTGAAGGTCGCTCAAGTTTGAATTTGCAATGTTCTTGGAGCTGTAAGCTGAGATGAA
GCCAACTTCTACCTCTCTAGGGTGTTTGTTAGGTGGATTGCTCCATCCACAGGTTTTTCGATGTCTTGCTGCTGCATTCT
TGAGTTGTGTCTGTGTCGCCAATCTCATGTTCAACATCTTGTTGTCGAGTCATCCCATTTTTGGGGATGTCCTCATTGTC
AGTGGCAGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33983.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis