Browse Element(s) Details


Os.17112.1.S1_at

Description gb:AK069008.1
DB_XREF= gi:32979032
TID=Os.17112.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17112 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-171-C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023003A10, full insert sequence.
FL= gb:AK069008.1 gb:AK060599.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1803011/11oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os01g097801/11
LOC_Os12g342101/11Transposable element protein, putative, MuDR
LOC_Os04g526141/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g17990Os.25001.1.S1_at11/113+9995552..9998559Yip1 domain containing protein, expressed
LOC_Os03g18000OsAffx.3265.1.S1_at10/113+10003272..10003838phosphoinositide-specific phospholipase C, putative
LOC_Os03g18010OsAffx.25128.1.S1_at10/113+10004299..10006802phosphoinositide-specific phospholipase C, putative, expressed
LOC_Os03g18020OsAffx.12906.1.S1_at11/113+10007156..10008084rhodanese-like family protein, putative
LOC_Os03g18020Os.41415.2.S1_x_at1/113+10007156..10008084rhodanese-like family protein, putative
LOC_Os03g18030Os.17112.1.S1_at11/113+10017919..10023212oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os03g18040OsAffx.12907.1.S1_at10/113+10023756..10024847hypothetical protein
LOC_Os03g18050OsAffx.28175.1.S1_s_at1/113+10036432..10037332Auxin responsive protein
LOC_Os03g18060Os.41695.5.S1_x_at7/113+10041768..10050708transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g18060Os.41695.15.S1_s_at5/113+10041768..10050708transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g18060Os.41695.3.S1_x_at3/113+10041768..10050708transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g18060Os.41695.4.S1_x_at3/113+10041768..10050708transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g18060Os.41695.2.S1_x_at2/113+10041768..10050708transposon protein, putative, Mutator sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0009813biological_processflavonoid biosynthesis
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
GO:0045431molecular_functionflavonol synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17112.1.S1_at--847--6611Chr03:10018352..10018376 (25 bp)
GTTGGCTTCAACTTGCAAGCTCCGA
LOC_Os03g18030
Os.17112.1.S1_at--1010--3231Chr03:10018337..10018361 (25 bp)
CAAGCTCCGATATCCATCCAGAAGG
LOC_Os03g18030
Os.17112.1.S1_at--712--2111Chr03:10018311..10018335 (25 bp)
ACATGTTTTTGTGGATAGCGTGCGT
LOC_Os03g18030
Os.17112.1.S1_at--127--311Chr03:10018297..10018321 (25 bp)
ATAGCGTGCGTTGGCGACCTGTAGA
LOC_Os03g18030
Os.17112.1.S1_at--957--6513Chr03:10018274..10018298 (25 bp)
GATATTATTACTCTCTCCATCTCAA
LOC_Os03g18030
Os.17112.1.S1_at--749--3212Chr02:16198691..16198891 (25 bp)
CAACTTGTCCTCAGGATTTGTCCCA
NONE
Os.17112.1.S1_at--453--97511Chr12:20699965..20700026 (25 bp)
TAATAACTTCTCCACCAACATTTTC
LOC_Os12g34210
Os.17112.1.S1_at--1087--8891Chr03:10017990..10018014 (25 bp)
TGAGACGACGTGGTGTATAGTACAT
LOC_Os03g18030
Os.17112.1.S1_at--564--10031Chr03:10017973..10017997 (25 bp)
TAGTACATAAACTCGTCTCACGCGC
LOC_Os03g18030
Os.17112.1.S1_at--759--4551Chr03:10017952..10017976 (25 bp)
GCGCCTAAATTGTCACCACATGCAT
LOC_Os03g18030
Os.17112.1.S1_at--239--5631Chr03:10017927..10017951 (25 bp)
GACAAAGTTACTCGCCTACGTACAT
LOC_Os03g18030
Target Sequence 
GTTGGCTTCAACTTGCAAGCTCCGATATCCATCCAGAAGGAACATGTTTTTGTGGATAGCGTGCGTTGGCGACCTGTAGA
TATTATTACTCTCTCCATCTCAAAATATAACAACTTGTCCTCAGGATTTGTCCCAAAATATAATAACTTCTCCACCAACA
TTTTCTTCCCAACCAATCATAACCCTCCACCATTCACTTTTCCCACCTACCTCCACTACTCATCTAATCACAACCCTCCA
CCATCCACTTCTACCTACTTTCTTAATAACCGTGTCGAACTCTAAAACTTCTTGTATTTTGGGATGGAGGGAGTAATAAA
TAATTGATGTTTATTCTACTTTGTGAAGATCATGGTGCAGAGTGAGACGACGTGGTGTATAGTACATAAACTCGTCTCAC
GCGCCTAAATTGTCACCACATGCATGACAAAGTTACTCGCCTACGTACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17112.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis