Browse Element(s) Details


OsAffx.12907.1.S1_at

Description tigr:9631.m01774
TID=OsAffx.12907.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1804010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18000OsAffx.3265.1.S1_at10/113+10003272..10003838phosphoinositide-specific phospholipase C, putative
LOC_Os03g18010OsAffx.25128.1.S1_at10/113+10004299..10006802phosphoinositide-specific phospholipase C, putative, expressed
LOC_Os03g18020OsAffx.12906.1.S1_at11/113+10007156..10008084rhodanese-like family protein, putative
LOC_Os03g18020Os.41415.2.S1_x_at1/113+10007156..10008084rhodanese-like family protein, putative
LOC_Os03g18030Os.17112.1.S1_at11/113+10017919..10023212oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os03g18040OsAffx.12907.1.S1_at10/113+10023756..10024847hypothetical protein
LOC_Os03g18050OsAffx.28175.1.S1_s_at1/113+10036432..10037332Auxin responsive protein
LOC_Os03g18060Os.41695.5.S1_x_at7/113+10041768..10050708transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g18060Os.41695.15.S1_s_at5/113+10041768..10050708transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g18060Os.41695.3.S1_x_at3/113+10041768..10050708transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g18060Os.41695.4.S1_x_at3/113+10041768..10050708transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g18060Os.41695.2.S1_x_at2/113+10041768..10050708transposon protein, putative, Mutator sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12907.1.S1_at--1149--5731NONE
GACGGGAAGGAATGGCCATTGCCAC
NONE
OsAffx.12907.1.S1_at--283--8211Chr03:10024654..10024678 (25 bp)
GGAATGGCCATTGCCACAGAAGGGC
LOC_Os03g18040
OsAffx.12907.1.S1_at--123--91Chr03:10024663..10024687 (25 bp)
ATTGCCACAGAAGGGCCGCGGATCT
LOC_Os03g18040
OsAffx.12907.1.S1_at--232--1471Chr03:10024671..10024695 (25 bp)
AGAAGGGCCGCGGATCTCCTACTTC
LOC_Os03g18040
OsAffx.12907.1.S1_at--870--2151Chr03:10024697..10024721 (25 bp)
ACACCACCAGATCCGGGTACCTGGA
LOC_Os03g18040
OsAffx.12907.1.S1_at--483--1711Chr03:10024702..10024726 (25 bp)
ACCAGATCCGGGTACCTGGAGGTCT
LOC_Os03g18040
OsAffx.12907.1.S1_at--516--3911Chr03:10024717..10024741 (25 bp)
CTGGAGGTCTGGGTACGTCGGATCT
LOC_Os03g18040
OsAffx.12907.1.S1_at--282--3891Chr03:10024725..10024749 (25 bp)
CTGGGTACGTCGGATCTGGCCACCG
LOC_Os03g18040
OsAffx.12907.1.S1_at--873--1791Chr03:10024746..10024770 (25 bp)
ACCGCCGAGACATTTCGGCTTGTGG
LOC_Os03g18040
OsAffx.12907.1.S1_at--875--5671Chr03:10024754..10024778 (25 bp)
GACATTTCGGCTTGTGGTAGGGAGA
LOC_Os03g18040
OsAffx.12907.1.S1_at--643--1051Chr03:10024787..10024811 (25 bp)
AGGTGGCTCCAGGACATGGGAAGAA
LOC_Os03g18040
Target Sequence 
GACGGGAAGGAATGGCCATTGCCACAGAAGGGCCGCGGATCTCCTACTTCCACACCACCAGATCCGGGTACCTGGAGGTC
TGGGTACGTCGGATCTGGCCACCGCCGAGACATTTCGGCTTGTGGTAGGGAGAGGAGGTGGAGGTGGCTCCAGGACATGG
GAAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12907.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis