Browse Element(s) Details


Os.6034.1.S1_at

Description gb:AU173534
DB_XREF= gi:12623321
DB_XREF=AU173534
CLONE=R3714
TID=Os.6034.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.6034 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_201381.1 (A.thaliana) S71174) (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0970011/111-aminocyclopropane-1-carboxylate synthase 7, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09660OsAffx.23171.1.S1_at11/111+4975900..4976830heavy metal-associated domain containing protein
LOC_Os01g09670Os.625.1.S1_at11/111+4978984..4981945Pollen-specific protein SF21, putative, expressed
LOC_Os01g09680NANA1+4984506..4985003hypothetical protein
LOC_Os01g09690OsAffx.21894.1.S1_x_at9/111+4988315..4990670hypothetical protein
LOC_Os01g09690OsAffx.21894.1.S1_at8/111+4988315..4990670hypothetical protein
LOC_Os01g09690OsAffx.21894.2.S1_at8/111+4988315..4990670hypothetical protein
LOC_Os01g09700Os.45926.1.S1_s_at11/111+4998920..50025291-aminocyclopropane-1-carboxylate synthase 7, putative, expressed
LOC_Os01g09700Os.6034.1.S1_at11/111+4998920..50025291-aminocyclopropane-1-carboxylate synthase 7, putative, expressed
LOC_Os01g09700OsAffx.14625.1.S1_x_at5/111+4998920..50025291-aminocyclopropane-1-carboxylate synthase 7, putative, expressed
LOC_Os01g09710OsAffx.22161.1.S1_at11/111+5006850..5009197hypothetical protein
LOC_Os01g09720NANA1+5011411..5012058Dof domain, zinc finger family protein
LOC_Os01g09730Os.31630.1.S1_x_at11/111+5013081..5015453expressed protein
LOC_Os01g09730Os.31630.2.S1_at11/111+5013081..5015453expressed protein
LOC_Os01g09740Os.31630.3.S1_at11/111+5014695..5016887F-box family protein, putative, expressed
LOC_Os01g09750Os.24087.1.S1_at11/111+5017890..502250623S rRNA methyltransferase RumA family protein, expressed
LOC_Os01g09750OsAffx.22118.1.S1_at1/111+5017890..502250623S rRNA methyltransferase RumA family protein, expressed
LOC_Os01g09760Os.45934.3.S1_x_at11/111+5026959..5033985DIRP family protein, expressed
LOC_Os01g09760Os.45934.3.S1_at11/111+5026959..5033985DIRP family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006445biological_processregulation of translation
GO:0009693biological_processethylene biosynthesis
GO:0009735biological_processresponse to cytokinin stimulus
GO:0016847molecular_function1-aminocyclopropane-1-carboxylate synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6034.1.S1_at--245--411Chr01:4999184..4999208 (25 bp)
ATCAGTTGCAAAGGTAGTTATATTA
LOC_Os01g09700
Os.6034.1.S1_at--869--7491Chr01:4999149..4999173 (25 bp)
GTGGTGACATACACTTGTTTCATTT
LOC_Os01g09700
Os.6034.1.S1_at--804--6832Chr06:9282611..9283032 (25 bp)
GTTTCATTTATCTATTGTACCATTA
NONE
Os.6034.1.S1_at--460--8671Chr01:4999118..4999142 (25 bp)
TGTACCATTAGTTTTGTAACCAAAT
LOC_Os01g09700
Os.6034.1.S1_at--683--2251Chr01:4999097..4999121 (25 bp)
AAATTTGTCTCTCTCACATGTTGGA
LOC_Os01g09700
Os.6034.1.S1_at--56--3751Chr01:4999085..4999109 (25 bp)
CTCACATGTTGGAGAGACGACAAAT
LOC_Os01g09700
Os.6034.1.S1_at--1064--2751Chr01:4999050..4999074 (25 bp)
AAGACTGGTCTAGCTCATTCAAGGT
LOC_Os01g09700
Os.6034.1.S1_at--340--1571Chr01:4999039..4999063 (25 bp)
AGCTCATTCAAGGTTAATTCTCTCC
LOC_Os01g09700
Os.6034.1.S1_at--342--9751Chr01:4999025..4999049 (25 bp)
TAATTCTCTCCTTATGCTCCAGTTA
LOC_Os01g09700
Os.6034.1.S1_at--444--9251Chr01:4999017..4999041 (25 bp)
TCCTTATGCTCCAGTTAGATGATCA
LOC_Os01g09700
Os.6034.1.S1_at--202--9651Chr01:4998975..4998999 (25 bp)
TCAGCTCCTAGGGAATTCATGTAAA
LOC_Os01g09700
Target Sequence 
ATCAGTTGCAAAGGTAGTTATATTATGGGGATTAAGTGGTGACATACACTTGTTTCATTTATCTATTGTACCATTAGTTT
TGTAACCAAATTTGTCTCTCTCACATGTTGGAGAGACGACAAATTAATACAGATAAGACTGGTCTAGCTCATTCAAGGTT
AATTCTCTCCTTATGCTCCAGTTAGATGATCATGAGATCAAATCGTCTNTCAGCTCCTAGGGAATTCATGTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6034.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis