Browse Element(s) Details


Os.623.3.S1_x_at

Description gb:NM_189680.1
DB_XREF= gi:34906443
GEN=P0671B11.14
TID=Os.623.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.623 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0671B11.14 (P0671B11.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0671B11.14 (P0671B11.14), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0964011/11myb-like DNA-binding domain, SHAQKYF class family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09620Os.49042.1.A1_s_at11/111+4945934..4947925zinc finger family protein, putative, expressed
LOC_Os01g09620Os.20244.1.S1_at11/111+4945934..4947925zinc finger family protein, putative, expressed
LOC_Os01g09620Os.37438.1.S1_at1/111+4945934..4947925zinc finger family protein, putative, expressed
LOC_Os01g09640Os.623.1.S1_x_at11/111+4968095..4970357myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g09640Os.623.3.S1_x_at11/111+4968095..4970357myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g09640Os.623.1.S1_at11/111+4968095..4970357myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g09640Os.623.2.S1_x_at11/111+4968095..4970357myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g09650OsAffx.10983.1.S1_at1/111+4972893..4973387hypothetical protein
LOC_Os01g09660OsAffx.23171.1.S1_at11/111+4975900..4976830heavy metal-associated domain containing protein
LOC_Os01g09670Os.625.1.S1_at11/111+4978984..4981945Pollen-specific protein SF21, putative, expressed
LOC_Os01g09680NANA1+4984506..4985003hypothetical protein
LOC_Os01g09690OsAffx.21894.1.S1_x_at9/111+4988315..4990670hypothetical protein
LOC_Os01g09690OsAffx.21894.1.S1_at8/111+4988315..4990670hypothetical protein
LOC_Os01g09690OsAffx.21894.2.S1_at8/111+4988315..4990670hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0045449biological_processregulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.623.3.S1_x_at--782--4671Chr01:4969866..4969890 (25 bp)
GCGGTGCGCCTCTGAAGAAGTGCTT
LOC_Os01g09640
Os.623.3.S1_x_at--223--1131Chr01:4969848..4969872 (25 bp)
AGTGCTTCAGCATGGAGTGCCTATC
LOC_Os01g09640
Os.623.3.S1_x_at--468--1451Chr01:4969707..4969731 (25 bp)
AGAAGATGGCCAACGGGTACCTCTC
LOC_Os01g09640
Os.623.3.S1_x_at--1065--4051Chr01:4969682..4969706 (25 bp)
CGATGGCCTCATGGCGAGAGCTCAG
LOC_Os01g09640
Os.623.3.S1_x_at--595--951Chr01:4969133..4969157 (25 bp)
AGGAAATTCCTGGTAGGGCTCGAGA
LOC_Os01g09640
Os.623.3.S1_x_at--371--9651Chr01:4969066..4969090 (25 bp)
TCACGACAAGAACACCGACGCAGGT
LOC_Os01g09640
Os.623.3.S1_x_at--734--2831Chr01:4969025..4969049 (25 bp)
AAGTATTTCCTCAGGCAGAGCAGCC
LOC_Os01g09640
Os.623.3.S1_x_at--1131--8251Chr01:4969012..4969036 (25 bp)
GGCAGAGCAGCCTCACGCAGAAGAA
LOC_Os01g09640
Os.623.3.S1_x_at--1014--2771Chr01:4968989..4969013 (25 bp)
AAGAGAAGATCCAGCCTCTTTGACG
LOC_Os01g09640
Os.623.3.S1_x_at--1143--10251Chr01:4968730..4968995 (25 bp)
TTTGACGTGCAGCATGGCACAGCCA
LOC_Os01g09640
Os.623.3.S1_x_at--1155--552Chr01:407961..407983 (22 bp)
ATCCTTCTCTGATGGTGGCAAAGCC
NONE
Target Sequence 
GCGGTGCGCCTCTGAAGAAGTGCTTCAGCATGGAGTGCCTATCGTCGCCGTCGCCGTCGCCGTCGCCGGCGTACTACGCC
GCGGTCGCCGCCGCCGCCTCCAACTCGTCGCCGACCGTGTCGTCGTCGTCGTCGCTGGTGTCGGTGGAGGAGGCCGGCGA
GAAGATGGCCAACGGGTACCTCTCCGATGGCCTCATGGCGAGAGCTCAGGAGAGGAAGAAGGGTGTTCCATGGACTGAAG
AGGAGCACAGGAAATTCCTGGTAGGGCTCGAGAAGCTCGGGAAAGGCGACTGGCGCGGCATTTCCCGGCACTTCGTCACG
ACAAGAACACCGACGCAGGTGGCCAGCCATGCCCAGAAGTATTTCCTCAGGCAGAGCAGCCTCACGCAGAAGAAGAGAAG
ATCCAGCCTCTTTGACGTGCAGCATGGCACAGCCAGAAGCCATGCTGCTGCCTCCTCCATCCTTAACCCTGACGCCAAGC
TGTTCATCACCAGCAGTGAGCAGCAGCAGCAGCGAACAACCAAGAACAATCCATCCTTCTCTGATGGTGGCAAAGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.623.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis