Browse Element(s) Details


Os.20244.1.S1_at

Description gb:AK100770.1
DB_XREF= gi:32985979
TID=Os.20244.1
CNT=56
FEA=FLmRNA
TIER=FL+Stack
STK=21
UG=Os.20244 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative zinc finger transcription factor (P0671B11.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023119N23, full insert sequence.
FL= gb:AK073660.1 gb:AK100770.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0962011/11zinc finger family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09600NANA1+4929300..4935396retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g09610OsAffx.21897.5.S1_x_at4/111+4935713..4938637retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g09620Os.49042.1.A1_s_at11/111+4945934..4947925zinc finger family protein, putative, expressed
LOC_Os01g09620Os.20244.1.S1_at11/111+4945934..4947925zinc finger family protein, putative, expressed
LOC_Os01g09620Os.37438.1.S1_at1/111+4945934..4947925zinc finger family protein, putative, expressed
LOC_Os01g09640Os.623.1.S1_x_at11/111+4968095..4970357myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g09640Os.623.3.S1_x_at11/111+4968095..4970357myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g09640Os.623.1.S1_at11/111+4968095..4970357myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g09640Os.623.2.S1_x_at11/111+4968095..4970357myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g09650OsAffx.10983.1.S1_at1/111+4972893..4973387hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20244.1.S1_at--1044--1151Chr01:4946500..4946524 (25 bp)
AGTCAAGTTTCTACTAATTCCTGTA
LOC_Os01g09620
Os.20244.1.S1_at--583--2831Chr01:4946496..4946520 (25 bp)
AAGTTTCTACTAATTCCTGTACATA
LOC_Os01g09620
Os.20244.1.S1_at--936--3151Chr01:4946485..4946509 (25 bp)
AATTCCTGTACATATCTATCTCCCA
LOC_Os01g09620
Os.20244.1.S1_at--168--10671Chr01:4946483..4946507 (25 bp)
TTCCTGTACATATCTATCTCCCATG
LOC_Os01g09620
Os.20244.1.S1_at--143--7031Chr01:4946478..4946502 (25 bp)
GTACATATCTATCTCCCATGTGAAT
LOC_Os01g09620
Os.20244.1.S1_at--41--10172Chr04:34825818..34825843 (25 bp)
TATCTATCTCCCATGTGAATATTCA
NONE
Os.20244.1.S1_at--1113--8671Chr01:4946460..4946484 (25 bp)
TGTGAATATTCATGGTTGGTGGAGA
LOC_Os01g09620
Os.20244.1.S1_at--247--5711Chr01:4946156..4946180 (25 bp)
GACTAGCTGATGAAGATCGTCGATC
LOC_Os01g09620
Os.20244.1.S1_at--986--3711Chr01:4946154..4946178 (25 bp)
CTAGCTGATGAAGATCGTCGATCGA
LOC_Os01g09620
Os.20244.1.S1_at--483--6651Chr01:4946107..4946131 (25 bp)
GTTGATTTCCTATTTTGTTGATGTA
LOC_Os01g09620
Os.20244.1.S1_at--835--10291Chr01:4946102..4946126 (25 bp)
TTTCCTATTTTGTTGATGTAATCTT
LOC_Os01g09620
Target Sequence 
AGTCAAGTTTCTACTAATTCCTGTACATATCTATCTCCCATGTGAATATTCATGGTTGGTGGAGAGGAGGCAAGTATGGA
AAGATGGGTGGATTTGTTTTGGGGTTTTGAGGTAGTAGCAAAATTACCCACAAAAAAATTAGGTGAAAAAAAAAAGAGGA
GTAGAAATGGAGGTGATTCAGTGTCTCCTGTGTGCATAGGGTGTGTGGAGGTGAAGGAAGCACGGAAGGAAGAAGATCAT
GGCGGAAGAAGATGGCCGGATTTCGGCCGCCGTCGCGGCGGCGGCCCTGCCTATTTCAGTGATTTCTGGGGGTTTATCCT
CTGTTCATCGTTTGTTGCATCATCGACTAGCTGATGAAGATCGTCGATCGATTTCAATCAAGCCCCCCCTCTTGTTGATT
TCCTATTTTGTTGATGTAATCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20244.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis