Browse Element(s) Details


Os.37438.1.S1_at

Description gb:AK058560.1
DB_XREF= gi:32968578
TID=Os.37438.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37438 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~similar to Arabidopsis thaliana chromosome 1, At1g22030 (P0648C09.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-017-D09, full insert sequence.
FL= gb:AK058560.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6542011/11expressed protein
LOC_Os01g096201/11zinc finger family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65380Os.7053.1.S1_s_at11/111+38275729..38278807Patellin-5, putative, expressed
LOC_Os01g65380Os.7053.1.S1_at11/111+38275729..38278807Patellin-5, putative, expressed
LOC_Os01g65400Os.24034.1.S1_a_at11/111+38281940..382858505'-3' exonuclease, N-terminal resolvase-like domain containing protein, expressed
LOC_Os01g65400Os.24034.3.S1_x_at11/111+38281940..382858505'-3' exonuclease, N-terminal resolvase-like domain containing protein, expressed
LOC_Os01g65400Os.24034.2.S1_x_at11/111+38281940..382858505'-3' exonuclease, N-terminal resolvase-like domain containing protein, expressed
LOC_Os01g65410Os.5420.1.S1_at11/111+38289408..38293657Serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed
LOC_Os01g65420Os.37438.1.S1_at11/111+38295821..38297183expressed protein
LOC_Os01g65440Os.26484.1.S1_at11/111+38309698..38312558universal stress protein family protein, expressed
LOC_Os01g65450Os.16536.1.S1_at11/111+38313689..38318627expressed protein
LOC_Os01g65460Os.9892.1.S1_a_at11/111+38321362..38328433Beta-galactosidase precursor, putative, expressed
LOC_Os01g65460Os.9892.2.S1_at11/111+38321362..38328433Beta-galactosidase precursor, putative, expressed
LOC_Os01g65460Os.42688.1.S1_x_at9/111+38321362..38328433Beta-galactosidase precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37438.1.S1_at--451--6272Chr01:38296249..38296273 (25 bp)
GATGTACGAGTTCCGGTGCGCGCGC
LOC_Os01g65420
Os.37438.1.S1_at--733--9291Chr01:38296017..38296041 (25 bp)
TCCGACCTTTGCAGCCACTGATCGA
LOC_Os01g65420
Os.37438.1.S1_at--73--5591Chr01:38295952..38295976 (25 bp)
GAAATGCTTCATGCTTCGCGTGGTA
LOC_Os01g65420
Os.37438.1.S1_at--743--4911Chr01:38295940..38295964 (25 bp)
GCTTCGCGTGGTAGAGTACTCGTAC
LOC_Os01g65420
Os.37438.1.S1_at--1021--7831Chr01:38295931..38295955 (25 bp)
GGTAGAGTACTCGTACTGTACGTAG
LOC_Os01g65420
Os.37438.1.S1_at--1024--5151Chr01:38295901..38295925 (25 bp)
GCAAGCATAATCTTCAGTAGCGAGT
LOC_Os01g65420
Os.37438.1.S1_at--856--431Chr01:38295892..38295916 (25 bp)
ATCTTCAGTAGCGAGTACGAGTAGT
LOC_Os01g65420
Os.37438.1.S1_at--45--6951Chr01:38295869..38295893 (25 bp)
GTAGTTAGTGGTACTCGATGAGACA
LOC_Os01g65420
Os.37438.1.S1_at--692--1991Chr01:38295857..38295881 (25 bp)
ACTCGATGAGACAGAGTGTGTCGCT
LOC_Os01g65420
Os.37438.1.S1_at--194--3431Chr01:38295846..38295870 (25 bp)
CAGAGTGTGTCGCTGTCACAGCATT
LOC_Os01g65420
Os.37438.1.S1_at--1102--9331Chr01:38295837..38295861 (25 bp)
TCGCTGTCACAGCATTTTGCTCATG
LOC_Os01g65420
Target Sequence 
GATGTACGAGTTCCGGTGCGCGCGCGCCGCCGTGGAGGCGGCGCACGAGGAGGTGGAGCGCGCCGTGGCGGCGGGCCCCC
GCAAGCAGCAGTGCGAGGACGGCGACGGCGGCGTCAAGGACAAGGTCGACGAGCTCAAGGCGNGGCTCGACGTGCTCCGG
ACCGGCACCGACGGCCTCGTCTGCCAGCTCGACGACTTCCTCGACGACATTGTCGAGGGCAGGAAGGAGCTCTCCGACCT
TTGCAGCCACTGATCGATCGACTGCAACACCATCATCATCGCCATGGATGATGGCATGAAATGCTTCATGCTTCGCGTGG
TAGAGTACTCGTACTGTACGTAGTAGTAGCAAGCATAATCTTCAGTAGCGAGTACGAGTAGTAGTTAGTGGTACTCGATG
AGACAGAGTGTGTCGCTGTCACAGCATTTTGCTCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37438.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis