Browse Element(s) Details


Os.26484.1.S1_at

Description gb:BX899873
DB_XREF= gi:40490331
DB_XREF=BX899873
CLONE=p772h12p3
TID=Os.26484.1
CNT=6
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.26484 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~similar to Arabidopsis thaliana chromosome 1, At1g44760 (P0648C09.19), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6544011/11universal stress protein family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65400Os.24034.1.S1_a_at11/111+38281940..382858505'-3' exonuclease, N-terminal resolvase-like domain containing protein, expressed
LOC_Os01g65400Os.24034.3.S1_x_at11/111+38281940..382858505'-3' exonuclease, N-terminal resolvase-like domain containing protein, expressed
LOC_Os01g65400Os.24034.2.S1_x_at11/111+38281940..382858505'-3' exonuclease, N-terminal resolvase-like domain containing protein, expressed
LOC_Os01g65410Os.5420.1.S1_at11/111+38289408..38293657Serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed
LOC_Os01g65420Os.37438.1.S1_at11/111+38295821..38297183expressed protein
LOC_Os01g65440Os.26484.1.S1_at11/111+38309698..38312558universal stress protein family protein, expressed
LOC_Os01g65450Os.16536.1.S1_at11/111+38313689..38318627expressed protein
LOC_Os01g65460Os.9892.1.S1_a_at11/111+38321362..38328433Beta-galactosidase precursor, putative, expressed
LOC_Os01g65460Os.9892.2.S1_at11/111+38321362..38328433Beta-galactosidase precursor, putative, expressed
LOC_Os01g65460Os.42688.1.S1_x_at9/111+38321362..38328433Beta-galactosidase precursor, putative, expressed
LOC_Os01g65470OsAffx.31174.5.S1_x_at11/111+38332742..38333489hypothetical protein
LOC_Os01g65470OsAffx.31174.4.S1_x_at5/111+38332742..38333489hypothetical protein
LOC_Os01g65480Os.8452.1.S1_at11/111+38336490..38339127DnaJ domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26484.1.S1_at--77--6371Chr01:38311367..38311391 (25 bp)
GATCCAAGGACCAAAGCTGGCCACT
LOC_Os01g65440
Os.26484.1.S1_at--162--991Chr01:38312151..38312175 (25 bp)
AGGAGTTCGTCGAGCAATGCATCAA
LOC_Os01g65440
Os.26484.1.S1_at--644--3011Chr01:38312166..38312190 (25 bp)
AATGCATCAACCAGGCTGAGTGCCT
LOC_Os01g65440
Os.26484.1.S1_at--677--4671Chr01:38312226..38312250 (25 bp)
GCGGGTACCTCATCAGCACACGGTG
LOC_Os01g65440
Os.26484.1.S1_at--412--8131Chr01:38312288..38312312 (25 bp)
GGACTATTCAATTTTCTGCCAAGGC
LOC_Os01g65440
Os.26484.1.S1_at--436--4391Chr01:38312305..38312329 (25 bp)
GCCAAGGCTTTCAAGTCTCTACATA
LOC_Os01g65440
Os.26484.1.S1_at--1160--4231Chr01:38312345..38312369 (25 bp)
CCGTATATCTGCCATTCTGTTTTAA
LOC_Os01g65440
Os.26484.1.S1_at--680--9471Chr01:38312360..38312384 (25 bp)
TCTGTTTTAACTGAGTGCGCCATAA
LOC_Os01g65440
Os.26484.1.S1_at--37--4011Chr01:38312413..38312437 (25 bp)
CGTGCAAGTGTTACCATCCGTTGTA
LOC_Os01g65440
Os.26484.1.S1_at--443--3291Chr01:38312443..38312467 (25 bp)
CAAAGGAGCCCTAGATCTGACCAAA
LOC_Os01g65440
Os.26484.1.S1_at--87--3651Chr01:38312473..38312497 (25 bp)
CTTCCCATCTTCTTTTCAAGTTCAG
LOC_Os01g65440
Target Sequence 
GATCCAAGGACCAAAGCTGGCCACTGNNCNNAGCCAAGTGAAGAAATTGGAGGCGTCTGNGCTTNGNGCTCANCCAATCC
AAGCCATCCCATTTCTGTNGGTTGAGTNGCATCCTGCGGAGCAGCANCGAGGAGTTCGTCGAGCAATGCATCAACCAGGC
TGAGTGCCTGACGTTGGCAGTGAGGAAGCAGAGCAAGGGCGTCGGCGGGTACCTCATCAGCACACGGTGGCAGAAGAACT
TCTGGCTCCTGGCTTGACAAAGCCNAGGACTATTCAATTTTCTGCCAAGGCTTTCAAGTCTCTACATAATCATATTTTTA
CCCCCGTATATCTGCCATTCTGTTTTAACTGAGTGCGCCATAAAAGCCTCCCCGCTGCCATGTTGCGTCACCGTGCAAGT
GTTACCATCCGTTGTAAAGCCCAAAGGAGCCCTAGATCTGACCAAACCCTACTTCCCATCTTCTTTTCAAGTTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26484.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis