Browse Element(s) Details


Os.5420.1.S1_at

Description gb:AK103554.1
DB_XREF= gi:32988763
TID=Os.5420.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5420 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative hydroxymethyltransferase (P0648C09.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033132G05, full insert sequence.
FL= gb:AK103554.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6541011/11Serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65380Os.7053.1.S1_s_at11/111+38275729..38278807Patellin-5, putative, expressed
LOC_Os01g65380Os.7053.1.S1_at11/111+38275729..38278807Patellin-5, putative, expressed
LOC_Os01g65400Os.24034.1.S1_a_at11/111+38281940..382858505'-3' exonuclease, N-terminal resolvase-like domain containing protein, expressed
LOC_Os01g65400Os.24034.3.S1_x_at11/111+38281940..382858505'-3' exonuclease, N-terminal resolvase-like domain containing protein, expressed
LOC_Os01g65400Os.24034.2.S1_x_at11/111+38281940..382858505'-3' exonuclease, N-terminal resolvase-like domain containing protein, expressed
LOC_Os01g65410Os.5420.1.S1_at11/111+38289408..38293657Serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed
LOC_Os01g65420Os.37438.1.S1_at11/111+38295821..38297183expressed protein
LOC_Os01g65440Os.26484.1.S1_at11/111+38309698..38312558universal stress protein family protein, expressed
LOC_Os01g65450Os.16536.1.S1_at11/111+38313689..38318627expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006544biological_processglycine metabolism
GO:0006563biological_processL-serine metabolism
GO:0005739cellular_componentmitochondrion
GO:0005829cellular_componentcytosol
GO:0004372molecular_functionglycine hydroxymethyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5420.1.S1_at--172--8891Chr01:38292982..38293006 (25 bp)
TGAGGCATGCCACATCTCCATAAAT
LOC_Os01g65410
Os.5420.1.S1_at--780--7951Chr01:38293024..38293048 (25 bp)
GGATAATGGCTCAATATCTCCTGGG
LOC_Os01g65410
Os.5420.1.S1_at--172--8171Chr01:38293158..38293182 (25 bp)
GGAACACCTGCAATGACTACTAGAG
LOC_Os01g65410
Os.5420.1.S1_at--314--6151Chr01:38293203..38293227 (25 bp)
GAGGTGATCGCAGATTTCCTCATCA
LOC_Os01g65410
Os.5420.1.S1_at--556--9651Chr01:38293225..38293249 (25 bp)
TCAGAGCCACCCAAATAGCTAGTAA
LOC_Os01g65410
Os.5420.1.S1_at--286--2931Chr01:38293278..38293302 (25 bp)
AAGGAATTCCTGAGAGGCCTACAGA
LOC_Os01g65410
Os.5420.1.S1_at--710--6511Chr01:38293311..38293335 (25 bp)
GATATCATAGAACTCCGTAACCAGG
LOC_Os01g65410
Os.5420.1.S1_at--546--1731Chr01:38293330..38293354 (25 bp)
ACCAGGTTGAGAATTTTGCATCGCA
LOC_Os01g65410
Os.5420.1.S1_at--596--1471Chr01:38293437..38293461 (25 bp)
AGCAACCGTTTCACTCTTTGCCGAA
LOC_Os01g65410
Os.5420.1.S1_at--626--2011Chr01:38293449..38293473 (25 bp)
ACTCTTTGCCGAAGTGTTTCTTTCA
LOC_Os01g65410
Os.5420.1.S1_at--654--2831Chr01:38293460..38293484 (25 bp)
AAGTGTTTCTTTCAACAGGAGCAGA
LOC_Os01g65410
Target Sequence 
TGAGGCATGCCACATCTCCATAAATAAGATGCCGATATATGGGGATAATGGCTCAATATCTCCTGGGGGTGTTCGGATTG
GAACACCTGCAATGACTACTAGAGGTTGCTTGGAAGATGACTTTGAGGTGATCGCAGATTTCCTCATCAGAGCCACCCAA
ATAGCTAGTAATCTTATGAAAGAACATGGAAAAATGCAGAAGGAATTCCTGAGAGGCCTACAGAACAATAAAGATATCAT
AGAACTCCGTAACCAGGTTGAGAATTTTGCATCGCAGTTTGCAATGCCAGGTTTTGATGTATGAGTGTGCATGTATGTGT
ACATATCTTGGTGAGGTTGTCCAGATTCATCAGGAATTAGCAACCGTTTCACTCTTTGCCGAAGTGTTTCTTTCAACAGG
AGCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5420.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis