Browse Element(s) Details


Os.7053.1.S1_s_at

Description gb:AK121856.1
DB_XREF= gi:37991479
TID=Os.7053.1
CNT=19
FEA=FLmRNA
TIER=FL+Stack
STK=9
UG=Os.7053 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains ESTs AU093915(E1276),AU162319(E60301)~similar to cytosolic factor~unknown protein (P0648C09.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033102G02, full insert sequence.
FL= gb:AK121856.1 gb:AK073077.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6538011/11Patellin-5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65360OsAffx.23923.1.S1_at11/111+38254254..38256080hypothetical protein
LOC_Os01g65370Os.37103.1.S1_at11/111+38259107..38260222Myb-like DNA-binding domain containing protein
LOC_Os01g65370Os.57514.1.S1_x_at7/111+38259107..38260222Myb-like DNA-binding domain containing protein
LOC_Os01g65380Os.7053.1.S1_s_at11/111+38275729..38278807Patellin-5, putative, expressed
LOC_Os01g65380Os.7053.1.S1_at11/111+38275729..38278807Patellin-5, putative, expressed
LOC_Os01g65400Os.24034.1.S1_a_at11/111+38281940..382858505'-3' exonuclease, N-terminal resolvase-like domain containing protein, expressed
LOC_Os01g65400Os.24034.3.S1_x_at11/111+38281940..382858505'-3' exonuclease, N-terminal resolvase-like domain containing protein, expressed
LOC_Os01g65400Os.24034.2.S1_x_at11/111+38281940..382858505'-3' exonuclease, N-terminal resolvase-like domain containing protein, expressed
LOC_Os01g65410Os.5420.1.S1_at11/111+38289408..38293657Serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed
LOC_Os01g65420Os.37438.1.S1_at11/111+38295821..38297183expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7053.1.S1_s_at--1155--10671Chr01:38278194..38278218 (25 bp)
TTCCACGATTGGATGGGAGCTCCGG
LOC_Os01g65380
Os.7053.1.S1_s_at--978--1511Chr01:38278245..38278269 (25 bp)
AGCAGAGTTCACTCCTGATGCCGAG
LOC_Os01g65380
Os.7053.1.S1_s_at--349--1451Chr01:38278403..38278427 (25 bp)
AGAAGCTCCTCTACAGATCCAAGGT
LOC_Os01g65380
Os.7053.1.S1_s_at--440--8891Chr01:38278450..38278474 (25 bp)
TGAGGTTGCAGCTGCCTGATCACCA
LOC_Os01g65380
Os.7053.1.S1_s_at--732--6431Chr01:38278467..38278491 (25 bp)
GATCACCAGATTCACCACAATGGCA
LOC_Os01g65380
Os.7053.1.S1_s_at--711--3391Chr01:38278490..38278514 (25 bp)
CAGCTGAACTCATTCCCTGATGGAA
LOC_Os01g65380
Os.7053.1.S1_s_at--912--10271Chr01:38278552..38278576 (25 bp)
TTTGCTGTTTTGGTTCACATTTTGT
LOC_Os01g65380
Os.7053.1.S1_s_at--36--2331Chr01:38278596..38278620 (25 bp)
AAAGTGAGCTTGTTTTTGTGATAGT
LOC_Os01g65380
Os.7053.1.S1_s_at--1008--2091Chr01:38278650..38278674 (25 bp)
ACATCGTGATGGTTTGTTGAGGGCA
LOC_Os01g65380
Os.7053.1.S1_s_at--89--5311Chr01:38278691..38278715 (25 bp)
GAAGGACTGAAGAATATCTGCTGCT
LOC_Os01g65380
Os.7053.1.S1_s_at--867--471Chr01:38278706..38278730 (25 bp)
ATCTGCTGCTTTGTATATCTGTCTG
LOC_Os01g65380
Target Sequence 
TTCCACGATTGGATGGGAGCTCCGGGTGCTTGGATGGGAGGTGAGCTACGGAGCAGAGTTCACTCCTGATGCCGAGGGTG
GATACACAGTCATCGTGCAGAAAACGAGGAAGGTGCCTGCAAATGAGGAACCAATCATGAAAGGCAGCTTCAAGGTTGGC
GAGCCAGGAAAGATTGTGCTAACGATCAACAACCCTGCATCAAAGAAGAAGAAGCTCCTCTACAGATCCAAGGTCAAGAG
CACCAGTGAGTCCGTTTGAGGTTGCAGCTGCCTGATCACCAGATTCACCACAATGGCAGCTGAACTCATTCCCTGATGGA
AGAGAAACCTTTTGGTTTTGGTTCTTTAATTTATTGGTTTTGCTGTTTTGGTTCACATTTTGTATTTGTTTAATTAAAAA
CCAAAGTGAGCTTGTTTTTGTGATAGTTGGAAGGAGAGGGTTGATATGATATAATGACATCGTGATGGTTTGTTGAGGGC
AGAGGACAAAAATTGTGGAAGGACTGAAGAATATCTGCTGCTTTGTATATCTGTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7053.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis