Browse Element(s) Details


OsAffx.23923.1.S1_at

Description tigr:9629.m06482
TID=OsAffx.23923.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6536011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65330Os.9187.1.S1_at11/111+38225796..38233007expressed protein
LOC_Os01g65340OsAffx.9633.1.S1_at11/111+38237371..38238205hypothetical protein
LOC_Os01g65350Os.24883.1.S1_s_at11/111+38241611..38245814deoxynucleoside kinase family, putative, expressed
LOC_Os01g65350Os.54011.1.S1_at11/111+38241611..38245814deoxynucleoside kinase family, putative, expressed
LOC_Os01g65350Os.27339.1.S1_at1/111+38241611..38245814deoxynucleoside kinase family, putative, expressed
LOC_Os01g65360OsAffx.23923.1.S1_at11/111+38254254..38256080hypothetical protein
LOC_Os01g65370Os.37103.1.S1_at11/111+38259107..38260222Myb-like DNA-binding domain containing protein
LOC_Os01g65370Os.57514.1.S1_x_at7/111+38259107..38260222Myb-like DNA-binding domain containing protein
LOC_Os01g65380Os.7053.1.S1_s_at11/111+38275729..38278807Patellin-5, putative, expressed
LOC_Os01g65380Os.7053.1.S1_at11/111+38275729..38278807Patellin-5, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23923.1.S1_at--470--5571Chr01:38255877..38255901 (25 bp)
GAAAGATCAGCCACAGGTTCTCTCC
LOC_Os01g65360
OsAffx.23923.1.S1_at--529--3311Chr01:38255888..38255912 (25 bp)
CACAGGTTCTCTCCTTCATCAAGGC
LOC_Os01g65360
OsAffx.23923.1.S1_at--993--9491Chr01:38255897..38255921 (25 bp)
TCTCCTTCATCAAGGCGTAGCACTA
LOC_Os01g65360
OsAffx.23923.1.S1_at--795--2931Chr01:38255908..38255932 (25 bp)
AAGGCGTAGCACTATCCAGGTTGAC
LOC_Os01g65360
OsAffx.23923.1.S1_at--1005--3691Chr01:38255919..38255943 (25 bp)
CTATCCAGGTTGACGCTTGACATGA
LOC_Os01g65360
OsAffx.23923.1.S1_at--548--3611Chr01:38255934..38255958 (25 bp)
CTTGACATGACAAGCATTCACTCCG
LOC_Os01g65360
OsAffx.23923.1.S1_at--728--7031Chr01:38255961..38255985 (25 bp)
GTACACCGACTCTCTGTGTGTGTTC
LOC_Os01g65360
OsAffx.23923.1.S1_at--823--5711Chr01:38255968..38255992 (25 bp)
GACTCTCTGTGTGTGTTCAGCACGC
LOC_Os01g65360
OsAffx.23923.1.S1_at--688--8671Chr01:38255975..38255999 (25 bp)
TGTGTGTGTTCAGCACGCGGATCCC
LOC_Os01g65360
OsAffx.23923.1.S1_at--230--8091Chr01:38256002..38256026 (25 bp)
GGACGCGCTGACTCCACCTGCAAAT
LOC_Os01g65360
OsAffx.23923.1.S1_at--850--1751Chr01:38256017..38256041 (25 bp)
ACCTGCAAATCCTCAACAGTGCAAG
LOC_Os01g65360
Target Sequence 
GAAAGATCAGCCACAGGTTCTCTCCTTCATCAAGGCGTAGCACTATCCAGGTTGACGCTTGACATGACAAGCATTCACTC
CGCCGTACACCGACTCTCTGTGTGTGTTCAGCACGCGGATCCCCCGGACGCGCTGACTCCACCTGCAAATCCTCAACAGT
GCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23923.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis