Browse Element(s) Details


Os.54011.1.S1_at

Description gb:AK101275.1
DB_XREF= gi:32986484
TID=Os.54011.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54011 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033033B15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033033B15, full insert sequence.
FL= gb:AK101275.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6535011/11deoxynucleoside kinase family, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65310Os.42329.1.A1_at11/111+38214459..38217304Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
LOC_Os01g65310Os.25066.1.S1_s_at11/111+38214459..38217304Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
LOC_Os01g65320Os.6400.1.S1_a_at11/111+38217483..38224296expressed protein
LOC_Os01g65330Os.9187.1.S1_at11/111+38225796..38233007expressed protein
LOC_Os01g65340OsAffx.9633.1.S1_at11/111+38237371..38238205hypothetical protein
LOC_Os01g65350Os.24883.1.S1_s_at11/111+38241611..38245814deoxynucleoside kinase family, putative, expressed
LOC_Os01g65350Os.54011.1.S1_at11/111+38241611..38245814deoxynucleoside kinase family, putative, expressed
LOC_Os01g65350Os.27339.1.S1_at1/111+38241611..38245814deoxynucleoside kinase family, putative, expressed
LOC_Os01g65360OsAffx.23923.1.S1_at11/111+38254254..38256080hypothetical protein
LOC_Os01g65370Os.37103.1.S1_at11/111+38259107..38260222Myb-like DNA-binding domain containing protein
LOC_Os01g65370Os.57514.1.S1_x_at7/111+38259107..38260222Myb-like DNA-binding domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006139biological_processnucleobase, nucleoside, nucleotide and nucleic acid metabolism
GO:0005524molecular_functionATP binding
GO:0016773molecular_functionphosphotransferase activity, alcohol group as acceptor
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54011.1.S1_at--820--4211Chr01:38242199..38242223 (25 bp)
CCGCATTTTTGCGATGCCCATTTTC
LOC_Os01g65350
Os.54011.1.S1_at--470--9151Chr01:38242190..38242214 (25 bp)
TGCGATGCCCATTTTCTTTAGAGAA
LOC_Os01g65350
Os.54011.1.S1_at--536--4551Chr01:38242184..38242208 (25 bp)
GCCCATTTTCTTTAGAGAATGCTAC
LOC_Os01g65350
Os.54011.1.S1_at--41--1371Chr01:38242171..38242195 (25 bp)
AGAGAATGCTACATACTTTTGGATC
LOC_Os01g65350
Os.54011.1.S1_at--777--291Chr01:38242140..38242164 (25 bp)
ATAGCTTCAGCTGAACATCCTGTGG
LOC_Os01g65350
Os.54011.1.S1_at--971--8971Chr01:38242129..38242153 (25 bp)
TGAACATCCTGTGGTGCCCTTGAGT
LOC_Os01g65350
Os.54011.1.S1_at--850--9271Chr01:38242123..38242147 (25 bp)
TCCTGTGGTGCCCTTGAGTTCAAAT
LOC_Os01g65350
Os.54011.1.S1_at--439--7771Chr01:38242117..38242141 (25 bp)
GGTGCCCTTGAGTTCAAATTTTCTG
LOC_Os01g65350
Os.54011.1.S1_at--274--6071Chr01:38242108..38242132 (25 bp)
GAGTTCAAATTTTCTGTGTCTGATA
LOC_Os01g65350
Os.54011.1.S1_at--790--7451Chr01:38242093..38242117 (25 bp)
GTGTCTGATATTTCCATCTTGTCCA
LOC_Os01g65350
Os.54011.1.S1_at--827--6511Chr01:38242087..38242111 (25 bp)
GATATTTCCATCTTGTCCATGAAGA
LOC_Os01g65350
Target Sequence 
CCGCATTTTTGCGATGCCCATTTTCTTTAGAGAATGCTACATACTTTTGGATCTTTTCTATAGCTTCAGCTGAACATCCT
GTGGTGCCCTTGAGTTCAAATTTTCTGTGTCTGATATTTCCATCTTGTCCATGAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54011.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis