Browse Element(s) Details


Os.25066.1.S1_s_at

Description gb:AK103484.1
DB_XREF= gi:32988693
TID=Os.25066.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25066 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033130L04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033130L04, full insert sequence.
FL= gb:AK103484.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6531011/11Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65250OsAffx.21702.1.S1_at11/111+38189484..38191600transposon protein, putative, Pong sub-class
LOC_Os01g65260Os.30033.1.S1_at11/111+38192962..38194909Amidophosphoribosyltransferase, chloroplast precursor, putative, expressed
LOC_Os01g65270OsAffx.9516.1.S1_at11/111+38201305..38202138retrotransposon protein, putative, unclassified
LOC_Os01g65280OsAffx.2412.1.S1_x_at11/111+38205285..38206586hypothetical protein
LOC_Os01g65280OsAffx.2412.1.S1_at11/111+38205285..38206586hypothetical protein
LOC_Os01g65290OsAffx.12779.1.S1_at11/111+38208253..38210756retrotransposon protein, putative, unclassified
LOC_Os01g65300NANA1+38212812..38213426retrotransposon protein, putative, unclassified
LOC_Os01g65310Os.42329.1.A1_at11/111+38214459..38217304Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
LOC_Os01g65310Os.25066.1.S1_s_at11/111+38214459..38217304Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
LOC_Os01g65320Os.6400.1.S1_a_at11/111+38217483..38224296expressed protein
LOC_Os01g65330Os.9187.1.S1_at11/111+38225796..38233007expressed protein
LOC_Os01g65340OsAffx.9633.1.S1_at11/111+38237371..38238205hypothetical protein
LOC_Os01g65350Os.24883.1.S1_s_at11/111+38241611..38245814deoxynucleoside kinase family, putative, expressed
LOC_Os01g65350Os.54011.1.S1_at11/111+38241611..38245814deoxynucleoside kinase family, putative, expressed
LOC_Os01g65350Os.27339.1.S1_at1/111+38241611..38245814deoxynucleoside kinase family, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25066.1.S1_s_at--223--7011Chr01:38216515..38216539 (25 bp)
GTACTCTTGTGCTACACTCTACTAG
LOC_Os01g65310
Os.25066.1.S1_s_at--225--5971Chr01:38216539..38216563 (25 bp)
GAGAACCTGATCAAACTCTTTCGGC
LOC_Os01g65310
Os.25066.1.S1_s_at--357--2531Chr01:38216552..38216664 (25 bp)
AACTCTTTCGGCAGACCTGTATGCA
LOC_Os01g65310
Os.25066.1.S1_s_at--837--651Chr01:38216660..38216684 (25 bp)
ATGCACCTCTTCCTCCAAAGATATA
LOC_Os01g65310
Os.25066.1.S1_s_at--1150--2411Chr01:38216721..38216745 (25 bp)
AAAAGAGGACGACTCACTTCCCTGT
LOC_Os01g65310
Os.25066.1.S1_s_at--271--5711Chr01:38216770..38216794 (25 bp)
GACTACTTTGTCTAGAGATCTTCCA
LOC_Os01g65310
Os.25066.1.S1_s_at--34--651Chr01:38216797..38216821 (25 bp)
ATGCTTGGCGTTTCATGCACATCTA
LOC_Os01g65310
Os.25066.1.S1_s_at--568--5891Chr01:38216829..38216853 (25 bp)
GAGCGGAGATTGGTACAGTCACTAA
LOC_Os01g65310
Os.25066.1.S1_s_at--560--8731Chr01:38216857..38216881 (25 bp)
TGTCATTCATAATCCCCTCAAGAGT
LOC_Os01g65310
Os.25066.1.S1_s_at--864--2951Chr01:38216981..38217005 (25 bp)
AATGGCCATACGGTGACTTCTGAGC
LOC_Os01g65310
Os.25066.1.S1_s_at--783--2931Chr01:38217115..38217139 (25 bp)
AAGGCTTGCTAATCGCTATCATTGA
LOC_Os01g65310
Target Sequence 
GTACTCTTGTGCTACACTCTACTAGAGAACCTGATCAAACTCTTTCGGCAGACCTGTATGCACCTCTTCCTCCAAAGATA
TACTGGCACATCCAAGGAAACGGGGATATAGGTAAACAAAAAGAGGACGACTCACTTCCCTGTGACATTATAACTGTCAT
GCGTCAAGACTACTTTGTCTAGAGATCTTCCAAGATGCTTGGCGTTTCATGCACATCTATTTGTNTGAGCGGAGATTGGT
ACAGTCACTAAGTCTGTCATTCATAATCCCCTCAAGAGTCAAGACCATCTTGCTACCAAGATCAAAGCAACTGCAAAATT
TTGTAGACATGTTGTTACTGGATTGTGTATCATTTGTCGAATACTCATGACAAAGCTAAATGGCCATACGGTGACTTCTG
AGCGAACAAACTCAGCCCCCTAGCCTGACAACTATGTGAAGATATTGTACAAAAATTGCCAGGAATGCAGTTCTTTTTTT
AACCCTTTCATTTGAACTGAAGGCAAGTATACAAGGCTTGCTAATCGCTATCATTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25066.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis