Browse Element(s) Details


OsAffx.2412.1.S1_x_at

Description tigr:9629.m06474
TID=OsAffx.2412.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6528011/11hypothetical protein
LOC_Os05g284042/11hypothetical protein
LOC_Os06g504992/11hypothetical protein
LOC_Os06g505691/11hypothetical protein
LOC_Os06g505301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65230Os.2328.1.S1_at11/111+38180254..38184359Protein kinase domain containing protein, expressed
LOC_Os01g65240Os.31886.1.S1_at11/111+38186938..38188979transposon protein, putative, Pong sub-class, expressed
LOC_Os01g65250OsAffx.21702.1.S1_at11/111+38189484..38191600transposon protein, putative, Pong sub-class
LOC_Os01g65260Os.30033.1.S1_at11/111+38192962..38194909Amidophosphoribosyltransferase, chloroplast precursor, putative, expressed
LOC_Os01g65270OsAffx.9516.1.S1_at11/111+38201305..38202138retrotransposon protein, putative, unclassified
LOC_Os01g65280OsAffx.2412.1.S1_x_at11/111+38205285..38206586hypothetical protein
LOC_Os01g65280OsAffx.2412.1.S1_at11/111+38205285..38206586hypothetical protein
LOC_Os01g65290OsAffx.12779.1.S1_at11/111+38208253..38210756retrotransposon protein, putative, unclassified
LOC_Os01g65300NANA1+38212812..38213426retrotransposon protein, putative, unclassified
LOC_Os01g65310Os.42329.1.A1_at11/111+38214459..38217304Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
LOC_Os01g65310Os.25066.1.S1_s_at11/111+38214459..38217304Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
LOC_Os01g65320Os.6400.1.S1_a_at11/111+38217483..38224296expressed protein
LOC_Os01g65330Os.9187.1.S1_at11/111+38225796..38233007expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2412.1.S1_x_at--20--6735Chr06:30612864..30612883 (20 bp)
GTTCTCGCCAACAACACATTCGTGT
NONE
OsAffx.2412.1.S1_x_at--868--2071Chr01:38206414..38206528 (25 bp)
ACATTCGTGTTCCAGTAGCTATGGA
LOC_Os01g65280
OsAffx.2412.1.S1_x_at--82--10611Chr01:38206411..38206525 (25 bp)
TTCGTGTTCCAGTAGCTATGGACAA
LOC_Os01g65280
OsAffx.2412.1.S1_x_at--931--7416Chr06:30612979..30612998 (20 bp)
GTGTTCCAGTAGCTATGGACAAGAT
NONE
OsAffx.2412.1.S1_x_at--292--852Chr05:16557666..16557693 (25 bp)
ATGGACAAGATGAATGGTGCCCGGA
LOC_Os05g28404
OsAffx.2412.1.S1_x_at--1008--2212Chr05:16557662..16557689 (25 bp)
ACAAGATGAATGGTGCCCGGAGCGA
LOC_Os05g28404
OsAffx.2412.1.S1_x_at--952--2954Chr06:30613007..30613026 (20 bp)
AATGGTGCCCGGAGCGAGAAGATCA
LOC_Os06g50569
OsAffx.2412.1.S1_x_at--533--7294Chr06:30613007..30613507 (25 bp)
GTGCCCGGAGCGAGAAGATCAATCA
NONE
OsAffx.2412.1.S1_x_at--790--4191Chr01:38206375..38206399 (25 bp)
CCCGGAGCGAGAAGATCAATCAGTC
LOC_Os01g65280
OsAffx.2412.1.S1_x_at--461--371Chr01:38206361..38206385 (25 bp)
ATCAATCAGTCGCTGCAGAAGTATG
LOC_Os01g65280
OsAffx.2412.1.S1_x_at--890--1451Chr01:38206345..38206369 (25 bp)
AGAAGTATGATCACCCACGCTGCAG
LOC_Os01g65280
Target Sequence 
GTTCTCGCCAACAACACATTCGTGTTCCAGTAGCTATGGACAAGATGAATGGTGCCCGGAGCGAGAAGATCAATCAGTCG
CTGCAGAAGTATGATCACCCACGCTGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2412.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis