Browse Element(s) Details


Os.31886.1.S1_at

Description gb:AK106574.1
DB_XREF= gi:32991783
TID=Os.31886.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.31886 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) simiar to ribosomal protein (OSJNBb0008G24.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-111-B06, full insert sequence.
FL= gb:AK106574.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6524011/11transposon protein, putative, Pong sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65200Os.26151.1.S1_s_at11/111+38161048..38163757POT family protein, expressed
LOC_Os01g65200Os.33629.1.S1_a_at11/111+38161048..38163757POT family protein, expressed
LOC_Os01g65210OsAffx.23922.1.S1_at11/111+38163986..38170513POT family protein, expressed
LOC_Os01g65210Os.7141.1.S1_at11/111+38163986..38170513POT family protein, expressed
LOC_Os01g65220Os.5254.1.S1_x_at11/111+38171772..381796275'-3' exoribonuclease, putative, expressed
LOC_Os01g65230Os.2328.1.S1_at11/111+38180254..38184359Protein kinase domain containing protein, expressed
LOC_Os01g65240Os.31886.1.S1_at11/111+38186938..38188979transposon protein, putative, Pong sub-class, expressed
LOC_Os01g65250OsAffx.21702.1.S1_at11/111+38189484..38191600transposon protein, putative, Pong sub-class
LOC_Os01g65260Os.30033.1.S1_at11/111+38192962..38194909Amidophosphoribosyltransferase, chloroplast precursor, putative, expressed
LOC_Os01g65270OsAffx.9516.1.S1_at11/111+38201305..38202138retrotransposon protein, putative, unclassified
LOC_Os01g65280OsAffx.2412.1.S1_x_at11/111+38205285..38206586hypothetical protein
LOC_Os01g65280OsAffx.2412.1.S1_at11/111+38205285..38206586hypothetical protein
LOC_Os01g65290OsAffx.12779.1.S1_at11/111+38208253..38210756retrotransposon protein, putative, unclassified
LOC_Os01g65300NANA1+38212812..38213426retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31886.1.S1_at--518--8191Chr01:38187787..38187811 (25 bp)
GGAAGCTACCATTCATATTGACTTG
LOC_Os01g65240
Os.31886.1.S1_at--1078--9151Chr01:38187739..38187763 (25 bp)
TGCGCTGCCTCCTGAAGTGAATATA
LOC_Os01g65240
Os.31886.1.S1_at--1099--2711Chr01:38187682..38187706 (25 bp)
CAAAAAAGCTACTGTCCGTTCTCGT
LOC_Os01g65240
Os.31886.1.S1_at--1150--6511Chr01:38187633..38187657 (25 bp)
GATTTGGTCGAGCACATTTGGCATA
LOC_Os01g65240
Os.31886.1.S1_at--486--831Chr01:38187497..38187519 (23 bp)
ATGGATTGTGCTGTTGCTGGTTGTC
LOC_Os01g65240
Os.31886.1.S1_at--934--7891Chr01:38187480..38187503 (24 bp)
GGTTGTCGTGGGTGCTACTTACAAT
LOC_Os01g65240
Os.31886.1.S1_at--487--8291Chr01:38187159..38187183 (25 bp)
GGCTTGTTGTTTCTTTCTACTGAAG
LOC_Os01g65240
Os.31886.1.S1_at--910--2011Chr01:38187091..38187115 (25 bp)
ACTAATGGTTTGTCTGCCAGAGAGC
LOC_Os01g65240
Os.31886.1.S1_at--318--3751Chr01:38187028..38187052 (25 bp)
CTCATGTAATGTTTTAAGCGCCGGT
LOC_Os01g65240
Os.31886.1.S1_at--543--2671Chr01:38187013..38187037 (25 bp)
AAGCGCCGGTGTCATGGTGCTCAAA
LOC_Os01g65240
Os.31886.1.S1_at--621--7771Chr01:38186998..38187022 (25 bp)
GGTGCTCAAATCTCATCATATCATG
LOC_Os01g65240
Target Sequence 
GGAAGCTACCATTCATATTGACTTGAATGAGAATCCAGGGGCATCGTTTGCGCTGCCTCCTGAAGTGAATATAGGTGGTA
ATCTGTGTTTTGCTGATGTGATGCGCAAAAAAGCTACTGTCCGTTCTCGTCCACAACACACCCAACTTAAAAATGATTTG
GTCGAGCACATTTGGCATAAGTTTGGAGATAACCATCATAATTAGTCATGGATTGTGCTGTTGCTGGTTGTCGTGGGTGC
TACTTACAATGAATGAAGGCTTTTGAGGCAAATGGTTTGGATGTTGCTTTCTACTGAAGTTTCAACTAAACTANGGCTTG
TTGTTTCTTTCTACTGAAGTTCCAACTAAGGCTCTATGCCATTATCGNTGTTCAGCTCAATAACTAATGGTTTGTCTGCC
AGAGAGCTTATTTAGCAGTACTTTTGGTTAATGTTTTCAGAAAGACTCATGTAATGTTTTAAGCGCCGGTGTCATGGTGC
TCAAATCTCATCATATCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31886.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis