Browse Element(s) Details


Os.7141.1.S1_at

Description gb:AK060248.1
DB_XREF= gi:32970266
TID=Os.7141.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.7141 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) oligopeptide transporter -like protein (OSJNBb0008G24.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-004-A02, full insert sequence.
FL= gb:AK060248.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6521011/11POT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65150Os.32964.1.S1_at11/111+38141522..38143624POT family protein, expressed
LOC_Os01g65150OsAffx.9518.1.S1_x_at1/111+38141522..38143624POT family protein, expressed
LOC_Os01g65169Os.53707.1.S1_x_at11/111+38148133..38153667POT family protein, expressed
LOC_Os01g65169OsAffx.23920.1.S1_at3/111+38148133..38153667POT family protein, expressed
LOC_Os01g65169OsAffx.9518.1.S1_x_at1/111+38148133..38153667POT family protein, expressed
LOC_Os01g65190OsAffx.11741.1.S1_x_at11/111+38155266..38159206POT family protein, expressed
LOC_Os01g65190Os.50574.1.S1_at1/111+38155266..38159206POT family protein, expressed
LOC_Os01g65190Os.53707.1.S1_x_at1/111+38155266..38159206POT family protein, expressed
LOC_Os01g65200Os.26151.1.S1_s_at11/111+38161048..38163757POT family protein, expressed
LOC_Os01g65200Os.33629.1.S1_a_at11/111+38161048..38163757POT family protein, expressed
LOC_Os01g65210OsAffx.23922.1.S1_at11/111+38163986..38170513POT family protein, expressed
LOC_Os01g65210Os.7141.1.S1_at11/111+38163986..38170513POT family protein, expressed
LOC_Os01g65220Os.5254.1.S1_x_at11/111+38171772..381796275'-3' exoribonuclease, putative, expressed
LOC_Os01g65230Os.2328.1.S1_at11/111+38180254..38184359Protein kinase domain containing protein, expressed
LOC_Os01g65240Os.31886.1.S1_at11/111+38186938..38188979transposon protein, putative, Pong sub-class, expressed
LOC_Os01g65250OsAffx.21702.1.S1_at11/111+38189484..38191600transposon protein, putative, Pong sub-class
LOC_Os01g65260Os.30033.1.S1_at11/111+38192962..38194909Amidophosphoribosyltransferase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7141.1.S1_at--204--5531Chr01:38166986..38167010 (25 bp)
GAAAAAGGTCATCTCAGTGCAGTGA
LOC_Os01g65210
Os.7141.1.S1_at--614--9611Chr01:38166994..38167018 (25 bp)
TCATCTCAGTGCAGTGACATTGTGT
LOC_Os01g65210
Os.7141.1.S1_at--746--2071Chr01:38167010..38167034 (25 bp)
ACATTGTGTGCAGCCTACATATTTG
LOC_Os01g65210
Os.7141.1.S1_at--593--9872Chr01:38167025..38167049 (25 bp)
TACATATTTGTAGCTCCACTGATAA
LOC_Os01g65210
Os.7141.1.S1_at--618--10051Chr01:38167031..38167055 (25 bp)
TTTGTAGCTCCACTGATAAGGTCAC
LOC_Os01g65210
Os.7141.1.S1_at--1011--9211Chr01:38167069..38167093 (25 bp)
TCCAGTCTCAAGAATGTAACATGGT
LOC_Os01g65210
Os.7141.1.S1_at--191--3511Chr01:38167088..38167112 (25 bp)
CATGGTAAAGCTGTATCTGGTATAA
LOC_Os01g65210
Os.7141.1.S1_at--51--331Chr01:38167142..38167166 (25 bp)
ATACGTCCTAACTATACTTTGTAAG
LOC_Os01g65210
Os.7141.1.S1_at--196--7051Chr01:38167162..38167186 (25 bp)
GTAAGAAATTATGTGACCCAGCTGC
LOC_Os01g65210
Os.7141.1.S1_at--906--151Chr01:38167169..38167193 (25 bp)
ATTATGTGACCCAGCTGCAAATGCA
LOC_Os01g65210
Os.7141.1.S1_at--954--9011Chr01:38167184..38167208 (25 bp)
TGCAAATGCAAATGAAATGTTCCTT
LOC_Os01g65210
Target Sequence 
GAAAAAGGTCATCTCAGTGCAGTGACATTGTGTGCAGCCTACATATTTGTAGCTCCACTGATAAGGTCACCTTCACAATC
TGNATCCAGTCTCAAGAATGTAACATGGTAAAGCTGTATCTGGTATAANGNATGNTTCCAGNTTCACTTNCCTTCATTGN
ATACGTCCTAACTATACTTTGTAAGAAATTATGTGACCCAGCTGCAAATGCAAATGAAATGTTCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7141.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis