Browse Element(s) Details


OsAffx.11741.1.S1_x_at

Description gb:NM_190808.1
DB_XREF= gi:34908699
GEN=OSJNBb0008G24.19
TID=OsAffx.11741.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) contains EST C25366(S6065)~similar to oligopeptide transporter (OSJNBb0008G24.19), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6519011/11POT family protein, expressed
LOC_Os01g651201/11POT family protein
LOC_Os01g651401/11POT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65130Os.35524.1.S3_at11/111+38130870..38135049expressed protein
LOC_Os01g65130Os.35524.1.S1_at11/111+38130870..38135049expressed protein
LOC_Os01g65130Os.35524.1.S2_at11/111+38130870..38135049expressed protein
LOC_Os01g65140OsAffx.11741.1.S1_x_at1/111+38137619..38138978POT family protein, expressed
LOC_Os01g65140Os.32964.1.S1_at1/111+38137619..38138978POT family protein, expressed
LOC_Os01g65140OsAffx.9518.1.S1_x_at1/111+38137619..38138978POT family protein, expressed
LOC_Os01g65150Os.32964.1.S1_at11/111+38141522..38143624POT family protein, expressed
LOC_Os01g65150OsAffx.9518.1.S1_x_at1/111+38141522..38143624POT family protein, expressed
LOC_Os01g65169Os.53707.1.S1_x_at11/111+38148133..38153667POT family protein, expressed
LOC_Os01g65169OsAffx.23920.1.S1_at3/111+38148133..38153667POT family protein, expressed
LOC_Os01g65169OsAffx.9518.1.S1_x_at1/111+38148133..38153667POT family protein, expressed
LOC_Os01g65190OsAffx.11741.1.S1_x_at11/111+38155266..38159206POT family protein, expressed
LOC_Os01g65190Os.50574.1.S1_at1/111+38155266..38159206POT family protein, expressed
LOC_Os01g65190Os.53707.1.S1_x_at1/111+38155266..38159206POT family protein, expressed
LOC_Os01g65200Os.26151.1.S1_s_at11/111+38161048..38163757POT family protein, expressed
LOC_Os01g65200Os.33629.1.S1_a_at11/111+38161048..38163757POT family protein, expressed
LOC_Os01g65210OsAffx.23922.1.S1_at11/111+38163986..38170513POT family protein, expressed
LOC_Os01g65210Os.7141.1.S1_at11/111+38163986..38170513POT family protein, expressed
LOC_Os01g65220Os.5254.1.S1_x_at11/111+38171772..381796275'-3' exoribonuclease, putative, expressed
LOC_Os01g65230Os.2328.1.S1_at11/111+38180254..38184359Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11741.1.S1_x_at--1107--1811Chr01:38158649..38158673 (25 bp)
ACGCTGTTGCCGGTCTACGACCGTG
LOC_Os01g65190
OsAffx.11741.1.S1_x_at--60--4791Chr01:38158684..38158708 (25 bp)
GCTCGCGAGGCGTCTCACAAGGCAC
LOC_Os01g65190
OsAffx.11741.1.S1_x_at--754--7151Chr01:38158695..38158719 (25 bp)
GTCTCACAAGGCACCTCGCGGGCAT
LOC_Os01g65190
OsAffx.11741.1.S1_x_at--424--7231Chr01:38158886..38158910 (25 bp)
GTCCTCCTCGGCACATCGAAGGTGT
LOC_Os01g65190
OsAffx.11741.1.S1_x_at--994--2091Chr01:38158898..38158922 (25 bp)
ACATCGAAGGTGTTCGGCCTCATCG
LOC_Os01g65190
OsAffx.11741.1.S1_x_at--991--3752Chr01:38158916..38158940 (25 bp)
CTCATCGGCCTCGAGGAGTTCTTCT
LOC_Os01g65190
OsAffx.11741.1.S1_x_at--406--8371Chr01:38159021..38159045 (25 bp)
GGCGTGCTCGTGTCAGCGATCGACT
LOC_Os01g65190
OsAffx.11741.1.S1_x_at--493--7451Chr01:38159030..38159054 (25 bp)
GTGTCAGCGATCGACTGGGTGACAA
LOC_Os01g65190
OsAffx.11741.1.S1_x_at--397--5311Chr01:38159060..38159084 (25 bp)
GAAGGAGAGAGCTGGTTCTCCGATA
LOC_Os01g65190
OsAffx.11741.1.S1_x_at--624--9892Chr01:38159108..38159132 (25 bp)
TACTTCTACTGGATCCTTGCCACAC
LOC_Os01g65190
OsAffx.11741.1.S1_x_at--662--3631Chr01:38159123..38159147 (25 bp)
CTTGCCACACTTGCCGCATTGGAGG
LOC_Os01g65190
Target Sequence 
ACGCTGTTGCCGGTCTACGACCGTGCCCTCGTGCCGCTCGCGAGGCGTCTCACAAGGCACCTCGCGGGCATCACCACGCT
CCAGCGCGTCGGCGCCGGCATGGCCATGTCGGGCCTCGCCATGGCCGTGGCGGCGCTCGTCGAGGCCAAACGGCTCCGCG
CCGCGAGCGACGCCGGGCTGGTCGACAGGCCAGACGCGACGGTGCCGACGAGCGTGTGGTGGCTGGTGCCGCAATTCGTC
CTCCTCGGCACATCGAAGGTGTTCGGCCTCATCGGCCTCGAGGAGTTCTTCTACGACCAGGTGCCCGTCGAGCTCTGCAG
CGTCGGGCTCGCCGTGTCCCTGAGCGTGCTGGGCGTCGGGAGCTACGCCAGTGGCGTGCTCGTGTCAGCGATCGACTGGG
TGACAAGGGGAGAAGGAGAGAGCTGGTTCTCCGATAACCTCAACCGCGCGCACCTCGACTACTTCTACTGGATCCTTGCC
ACACTTGCCGCATTGGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11741.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis