Browse Element(s) Details


OsAffx.23922.1.S1_at

Description tigr:9629.m06467
TID=OsAffx.23922.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=POT family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6521011/11POT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65150Os.32964.1.S1_at11/111+38141522..38143624POT family protein, expressed
LOC_Os01g65150OsAffx.9518.1.S1_x_at1/111+38141522..38143624POT family protein, expressed
LOC_Os01g65169Os.53707.1.S1_x_at11/111+38148133..38153667POT family protein, expressed
LOC_Os01g65169OsAffx.23920.1.S1_at3/111+38148133..38153667POT family protein, expressed
LOC_Os01g65169OsAffx.9518.1.S1_x_at1/111+38148133..38153667POT family protein, expressed
LOC_Os01g65190OsAffx.11741.1.S1_x_at11/111+38155266..38159206POT family protein, expressed
LOC_Os01g65190Os.50574.1.S1_at1/111+38155266..38159206POT family protein, expressed
LOC_Os01g65190Os.53707.1.S1_x_at1/111+38155266..38159206POT family protein, expressed
LOC_Os01g65200Os.26151.1.S1_s_at11/111+38161048..38163757POT family protein, expressed
LOC_Os01g65200Os.33629.1.S1_a_at11/111+38161048..38163757POT family protein, expressed
LOC_Os01g65210OsAffx.23922.1.S1_at11/111+38163986..38170513POT family protein, expressed
LOC_Os01g65210Os.7141.1.S1_at11/111+38163986..38170513POT family protein, expressed
LOC_Os01g65220Os.5254.1.S1_x_at11/111+38171772..381796275'-3' exoribonuclease, putative, expressed
LOC_Os01g65230Os.2328.1.S1_at11/111+38180254..38184359Protein kinase domain containing protein, expressed
LOC_Os01g65240Os.31886.1.S1_at11/111+38186938..38188979transposon protein, putative, Pong sub-class, expressed
LOC_Os01g65250OsAffx.21702.1.S1_at11/111+38189484..38191600transposon protein, putative, Pong sub-class
LOC_Os01g65260Os.30033.1.S1_at11/111+38192962..38194909Amidophosphoribosyltransferase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23922.1.S1_at--852--3551Chr01:38168647..38168793 (25 bp)
CATCTCTCAGATCTTCGTGGTGAAG
LOC_Os01g65210
OsAffx.23922.1.S1_at--996--7871Chr01:38168812..38168836 (25 bp)
GGTTATCCAACCGACGTCAAGCATG
LOC_Os01g65210
OsAffx.23922.1.S1_at--368--7091Chr01:38168827..38168851 (25 bp)
GTCAAGCATGTCACGCACATAGGTT
LOC_Os01g65210
OsAffx.23922.1.S1_at--768--9131Chr01:38168871..38168997 (25 bp)
TGCGGCTTCTCCTAGCTGGATGAAT
LOC_Os01g65210
OsAffx.23922.1.S1_at--44--7811Chr01:38169008..38169032 (25 bp)
GGTCGCCTGACTATTCGTCTTTGAA
LOC_Os01g65210
OsAffx.23922.1.S1_at--292--3131Chr01:38169034..38169058 (25 bp)
AATTTTGGACCATCTACAGGAACGT
LOC_Os01g65210
OsAffx.23922.1.S1_at--896--2571Chr01:38169054..38169475 (25 bp)
AACGTCCTGGACTTCTCAAGTTTGT
LOC_Os01g65210
OsAffx.23922.1.S1_at--400--5651Chr01:38170267..38170291 (25 bp)
GACAGATTTCGATCACCCTCAAGAT
LOC_Os01g65210
OsAffx.23922.1.S1_at--472--10171Chr01:38170293..38170317 (25 bp)
TATCACCCTTCGGTTTATATGTCGA
LOC_Os01g65210
OsAffx.23922.1.S1_at--161--1711Chr01:38170357..38170381 (25 bp)
ACCAAAGCCGCCCAGGAAGAGCAGA
LOC_Os01g65210
OsAffx.23922.1.S1_at--142--3231Chr01:38170393..38170417 (25 bp)
CAAGAACAATTCACCGACGGCTTCG
LOC_Os01g65210
Target Sequence 
CATCTCTCAGATCTTCGTGGTGAAGGAACACCAAATGGAGATTGGTTATCCAACCGACGTCAAGCATGTCACGCACATAG
GTTGGGATAGCCCGACAGGGAGTGCGGCTTCTCCTAGCTGGATGAATGACATGAAGGGGTCGCCTGACTATTCGTCTTTG
AACAATTTTGGACCATCTACAGGAACGTCCTGGACTTCTCAAGTTTGTTCGACAGATTTCGATCACCCTCAAGATATATC
ACCCTTCGGTTTATATGTCGAAAATGCTGGTAAGGAAGCAAATCCACCACATCCCGACATACCAAAGCCGCCCAGGAAGA
GCAGAAGGAAGAAATCCAAGAACAATTCACCGACGGCTTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23922.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis