Browse Element(s) Details


Os.26151.1.S1_s_at

Description gb:BM419009
DB_XREF= gi:18385810
DB_XREF=R007H04
CLONE=R007H04
TID=Os.26151.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.26151 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6520011/11POT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65140OsAffx.11741.1.S1_x_at1/111+38137619..38138978POT family protein, expressed
LOC_Os01g65140Os.32964.1.S1_at1/111+38137619..38138978POT family protein, expressed
LOC_Os01g65140OsAffx.9518.1.S1_x_at1/111+38137619..38138978POT family protein, expressed
LOC_Os01g65150Os.32964.1.S1_at11/111+38141522..38143624POT family protein, expressed
LOC_Os01g65150OsAffx.9518.1.S1_x_at1/111+38141522..38143624POT family protein, expressed
LOC_Os01g65169Os.53707.1.S1_x_at11/111+38148133..38153667POT family protein, expressed
LOC_Os01g65169OsAffx.23920.1.S1_at3/111+38148133..38153667POT family protein, expressed
LOC_Os01g65169OsAffx.9518.1.S1_x_at1/111+38148133..38153667POT family protein, expressed
LOC_Os01g65190OsAffx.11741.1.S1_x_at11/111+38155266..38159206POT family protein, expressed
LOC_Os01g65190Os.50574.1.S1_at1/111+38155266..38159206POT family protein, expressed
LOC_Os01g65190Os.53707.1.S1_x_at1/111+38155266..38159206POT family protein, expressed
LOC_Os01g65200Os.26151.1.S1_s_at11/111+38161048..38163757POT family protein, expressed
LOC_Os01g65200Os.33629.1.S1_a_at11/111+38161048..38163757POT family protein, expressed
LOC_Os01g65210OsAffx.23922.1.S1_at11/111+38163986..38170513POT family protein, expressed
LOC_Os01g65210Os.7141.1.S1_at11/111+38163986..38170513POT family protein, expressed
LOC_Os01g65220Os.5254.1.S1_x_at11/111+38171772..381796275'-3' exoribonuclease, putative, expressed
LOC_Os01g65230Os.2328.1.S1_at11/111+38180254..38184359Protein kinase domain containing protein, expressed
LOC_Os01g65240Os.31886.1.S1_at11/111+38186938..38188979transposon protein, putative, Pong sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26151.1.S1_s_at--23--5311Chr01:38163607..38163631 (25 bp)
GAAGGAGATCTAGCCTAGGTGCCAC
LOC_Os01g65200
Os.26151.1.S1_s_at--1110--971Chr01:38163609..38163633 (25 bp)
AGGAGATCTAGCCTAGGTGCCACAG
LOC_Os01g65200
Os.26151.1.S1_s_at--292--8051Chr01:38163610..38163634 (25 bp)
GGAGATCTAGCCTAGGTGCCACAGC
LOC_Os01g65200
Os.26151.1.S1_s_at--30--1291Chr01:38163612..38163636 (25 bp)
AGATCTAGCCTAGGTGCCACAGCAA
LOC_Os01g65200
Os.26151.1.S1_s_at--984--6411Chr01:38163613..38163637 (25 bp)
GATCTAGCCTAGGTGCCACAGCAAG
LOC_Os01g65200
Os.26151.1.S1_s_at--690--9531Chr01:38163615..38163639 (25 bp)
TCTAGCCTAGGTGCCACAGCAAGTA
LOC_Os01g65200
Os.26151.1.S1_s_at--273--9991Chr01:38163617..38163641 (25 bp)
TAGCCTAGGTGCCACAGCAAGTAAA
LOC_Os01g65200
Os.26151.1.S1_s_at--633--4451Chr01:38163619..38163643 (25 bp)
GCCTAGGTGCCACAGCAAGTAAAAA
LOC_Os01g65200
Os.26151.1.S1_s_at--964--3691Chr01:38163621..38163645 (25 bp)
CTAGGTGCCACAGCAAGTAAAAATT
LOC_Os01g65200
Os.26151.1.S1_s_at--553--7791Chr01:38163624..38163648 (25 bp)
GGTGCCACAGCAAGTAAAAATTGCT
LOC_Os01g65200
Os.26151.1.S1_s_at--121--2251Chr01:38163641..38163665 (25 bp)
AAATTGCTGTGGAGAAATGTTGATT
LOC_Os01g65200
Target Sequence 
GAAGGAGATCTAGCCTAGGTGCCACAGCAAGTAAAAATTGCTGTGGAGAAATGTTGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26151.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis