Browse Element(s) Details


Os.53707.1.S1_x_at

Description gb:AK099405.1
DB_XREF= gi:32984614
TID=Os.53707.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53707 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001K17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001K17, full insert sequence.
FL= gb:AK099405.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6516911/11POT family protein, expressed
LOC_Os05g356501/11POT family protein, expressed
LOC_Os01g651901/11POT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65110Os.32686.1.S1_at11/111+38122445..38124590POT family protein, expressed
LOC_Os01g65120OsAffx.9518.1.S1_at11/111+38127805..38129652POT family protein
LOC_Os01g65120OsAffx.9518.1.S1_x_at11/111+38127805..38129652POT family protein
LOC_Os01g65120OsAffx.11741.1.S1_x_at1/111+38127805..38129652POT family protein
LOC_Os01g65130Os.35524.1.S3_at11/111+38130870..38135049expressed protein
LOC_Os01g65130Os.35524.1.S1_at11/111+38130870..38135049expressed protein
LOC_Os01g65130Os.35524.1.S2_at11/111+38130870..38135049expressed protein
LOC_Os01g65140OsAffx.11741.1.S1_x_at1/111+38137619..38138978POT family protein, expressed
LOC_Os01g65140Os.32964.1.S1_at1/111+38137619..38138978POT family protein, expressed
LOC_Os01g65140OsAffx.9518.1.S1_x_at1/111+38137619..38138978POT family protein, expressed
LOC_Os01g65150Os.32964.1.S1_at11/111+38141522..38143624POT family protein, expressed
LOC_Os01g65150OsAffx.9518.1.S1_x_at1/111+38141522..38143624POT family protein, expressed
LOC_Os01g65169Os.53707.1.S1_x_at11/111+38148133..38153667POT family protein, expressed
LOC_Os01g65169OsAffx.23920.1.S1_at3/111+38148133..38153667POT family protein, expressed
LOC_Os01g65169OsAffx.9518.1.S1_x_at1/111+38148133..38153667POT family protein, expressed
LOC_Os01g65190OsAffx.11741.1.S1_x_at11/111+38155266..38159206POT family protein, expressed
LOC_Os01g65190Os.50574.1.S1_at1/111+38155266..38159206POT family protein, expressed
LOC_Os01g65190Os.53707.1.S1_x_at1/111+38155266..38159206POT family protein, expressed
LOC_Os01g65200Os.26151.1.S1_s_at11/111+38161048..38163757POT family protein, expressed
LOC_Os01g65200Os.33629.1.S1_a_at11/111+38161048..38163757POT family protein, expressed
LOC_Os01g65210OsAffx.23922.1.S1_at11/111+38163986..38170513POT family protein, expressed
LOC_Os01g65210Os.7141.1.S1_at11/111+38163986..38170513POT family protein, expressed
LOC_Os01g65220Os.5254.1.S1_x_at11/111+38171772..381796275'-3' exoribonuclease, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53707.1.S1_x_at--262--1911Chr01:38153169..38153193 (25 bp)
ACGTGCTGCCTCCACATGGTCGTGG
LOC_Os01g65169
Os.53707.1.S1_x_at--992--1171Chr01:38153290..38153314 (25 bp)
AGTACGCCCTCGTCGGGCTATCGAA
LOC_Os01g65169
Os.53707.1.S1_x_at--955--3691Chr01:38153307..38153331 (25 bp)
CTATCGAAGGTGTTCGGCGTCATCG
LOC_Os01g65169
Os.53707.1.S1_x_at--845--8791Chr01:38153317..38153341 (25 bp)
TGTTCGGCGTCATCGGGCTCCAGGA
LOC_Os01g65169
Os.53707.1.S1_x_at--575--7132Chr01:38153325..38153349 (25 bp)
GTCATCGGGCTCCAGGAGTTCTTCT
LOC_Os01g65169
Os.53707.1.S1_x_at--317--9331Chr01:38153545..38153569 (25 bp)
TCGCCGCATTGGATGTCGCCGTTTT
LOC_Os01g65169
Os.53707.1.S1_x_at--977--9312Chr01:38153560..38153584 (25 bp)
TCGCCGTTTTCGTGTACATTGCAAA
LOC_Os01g65169
Os.53707.1.S1_x_at--725--3571Chr01:38153576..38153600 (25 bp)
CATTGCAAAGCGATATGTCTACAGG
LOC_Os01g65169
Os.53707.1.S1_x_at--735--9531Chr01:38153593..38153617 (25 bp)
TCTACAGGAACAAAGACGAGCAATG
LOC_Os01g65169
Os.53707.1.S1_x_at--1108--5771Chr01:38153607..38153631 (25 bp)
GACGAGCAATGATTCTTCTGTTTTT
LOC_Os01g65169
Os.53707.1.S1_x_at--326--231Chr01:38153642..38153666 (25 bp)
ATATCTGAAAAATGGTTCGCATGGG
LOC_Os01g65169
Target Sequence 
ACGTGCTGCCTCCACATGGTCGTGGCGGCGCTCGTCGAGGCCAAACGGCTCCGCGCCGCGAGCGACGCCGGGCTGCCGGC
GGACGCCACCGTGCCGATGAGCGTGTGGTGGCTGGTGCCGCAGTACGCCCTCGTCGGGCTATCGAAGGTGTTCGGCGTCA
TCGGGCTCCAGGAGTTCTTCTACGACCAGGTGCCCGACGACCTCCGCAGCGTCGGGCTCGCCATGTCGCTGAGCGCGCAG
GGCGTCGGGAGCTACGCCAGCAGCGCGCTCGTGTCGGCGATCGACTGGGCGACGACGAGGAGAGGAGGAGAGAGCTGGTT
CTCCGACGACATCAACCGCGCGCACCTCGACTACTTCTACTGGCTCCTCGCCGCACTCGCCGCATTGGATGTCGCCGTTT
TCGTGTACATTGCAAAGCGATATGTCTACAGGAACAAAGACGAGCAATGATTCTTCTGTTTTTTTTTATATATATATCTG
AAAAATGGTTCGCATGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53707.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis