Browse Element(s) Details


Os.32686.1.S1_at

Description gb:AK103248.1
DB_XREF= gi:32988457
TID=Os.32686.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32686 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0039A07.26 (P0039A07.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033123K24, full insert sequence.
FL= gb:AK103248.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6511011/11POT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65080Os.8796.2.S1_a_at11/111+38100843..38105482zinc finger family protein, putative, expressed
LOC_Os01g65090Os.7646.1.S1_a_at11/111+38106361..38109701aminotransferase, classes I and II family protein, expressed
LOC_Os01g65100Os.9321.1.S1_a_at11/111+38117333..38119737POT family protein, expressed
LOC_Os01g65110Os.32686.1.S1_at11/111+38122445..38124590POT family protein, expressed
LOC_Os01g65120OsAffx.9518.1.S1_at11/111+38127805..38129652POT family protein
LOC_Os01g65120OsAffx.9518.1.S1_x_at11/111+38127805..38129652POT family protein
LOC_Os01g65120OsAffx.11741.1.S1_x_at1/111+38127805..38129652POT family protein
LOC_Os01g65130Os.35524.1.S3_at11/111+38130870..38135049expressed protein
LOC_Os01g65130Os.35524.1.S1_at11/111+38130870..38135049expressed protein
LOC_Os01g65130Os.35524.1.S2_at11/111+38130870..38135049expressed protein
LOC_Os01g65140OsAffx.11741.1.S1_x_at1/111+38137619..38138978POT family protein, expressed
LOC_Os01g65140Os.32964.1.S1_at1/111+38137619..38138978POT family protein, expressed
LOC_Os01g65140OsAffx.9518.1.S1_x_at1/111+38137619..38138978POT family protein, expressed
LOC_Os01g65150Os.32964.1.S1_at11/111+38141522..38143624POT family protein, expressed
LOC_Os01g65150OsAffx.9518.1.S1_x_at1/111+38141522..38143624POT family protein, expressed
LOC_Os01g65169Os.53707.1.S1_x_at11/111+38148133..38153667POT family protein, expressed
LOC_Os01g65169OsAffx.23920.1.S1_at3/111+38148133..38153667POT family protein, expressed
LOC_Os01g65169OsAffx.9518.1.S1_x_at1/111+38148133..38153667POT family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32686.1.S1_at--439--10591Chr01:38124260..38124284 (25 bp)
TTCTCGCGGGTGTACACCTACAAGA
LOC_Os01g65110
Os.32686.1.S1_at--1027--2871Chr01:38124287..38124311 (25 bp)
AAGGGCAACGATGCTGATGGCAATT
LOC_Os01g65110
Os.32686.1.S1_at--712--851Chr01:38124336..38124360 (25 bp)
ATGGCATCTGCGTGTAAACCTCCGA
LOC_Os01g65110
Os.32686.1.S1_at--714--9831Chr01:38124350..38124374 (25 bp)
TAAACCTCCGATTTGTGCTCTGTTG
LOC_Os01g65110
Os.32686.1.S1_at--1017--4231Chr01:38124357..38124381 (25 bp)
CCGATTTGTGCTCTGTTGCTTCATT
LOC_Os01g65110
Os.32686.1.S1_at--529--10731Chr01:38124372..38124396 (25 bp)
TTGCTTCATTGCTCGCGAGTGTACA
LOC_Os01g65110
Os.32686.1.S1_at--4--3071Chr01:38124403..38124427 (25 bp)
AATCTCGAATTGTTGTAGTGCGTTA
LOC_Os01g65110
Os.32686.1.S1_at--4--8771Chr01:38124416..38124440 (25 bp)
TGTAGTGCGTTATCATATACTCTGA
LOC_Os01g65110
Os.32686.1.S1_at--301--3151Chr01:38124508..38124532 (25 bp)
AATTCATCGGATGGGCCTGCGAACA
LOC_Os01g65110
Os.32686.1.S1_at--558--8651Chr01:38124519..38124543 (25 bp)
TGGGCCTGCGAACACATTCTCTTCA
LOC_Os01g65110
Os.32686.1.S1_at--71--6651Chr01:38124545..38124569 (25 bp)
GTTGTTGAACAATATTCCCTCCAGT
LOC_Os01g65110
Target Sequence 
TTCTCGCGGGTGTACACCTACAAGAAGAAGGGCAACGATGCTGATGGCAATTGTGATTACAGGGGAGTTGATGATGATGG
CATCTGCGTGTAAACCTCCGATTTGTGCTCTGTTGCTTCATTGCTCGCGAGTGTACACAAAAAAATCTCGAATTGTTGTA
GTGCGTTATCATATACTCTGATGATCAAGTGATCAGTAATCAGAGCAAAGATGGCGAGCTGATGAGCATGGTGGACCGAG
GTGAACAAAATTCATCGGATGGGCCTGCGAACACATTCTCTTCATGTTGTTGAACAATATTCCCTCCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32686.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis