Browse Element(s) Details


Os.9321.1.S1_a_at

Description gb:AK068840.1
DB_XREF= gi:32978865
TID=Os.9321.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9321 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0039A07.25 (P0039A07.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013160B01, full insert sequence.
FL= gb:AK068840.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6510011/11POT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65070Os.9689.1.S1_at11/111+38090281..38097251hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g65080Os.8796.2.S1_a_at11/111+38100843..38105482zinc finger family protein, putative, expressed
LOC_Os01g65090Os.7646.1.S1_a_at11/111+38106361..38109701aminotransferase, classes I and II family protein, expressed
LOC_Os01g65100Os.9321.1.S1_a_at11/111+38117333..38119737POT family protein, expressed
LOC_Os01g65110Os.32686.1.S1_at11/111+38122445..38124590POT family protein, expressed
LOC_Os01g65120OsAffx.9518.1.S1_at11/111+38127805..38129652POT family protein
LOC_Os01g65120OsAffx.9518.1.S1_x_at11/111+38127805..38129652POT family protein
LOC_Os01g65120OsAffx.11741.1.S1_x_at1/111+38127805..38129652POT family protein
LOC_Os01g65130Os.35524.1.S3_at11/111+38130870..38135049expressed protein
LOC_Os01g65130Os.35524.1.S1_at11/111+38130870..38135049expressed protein
LOC_Os01g65130Os.35524.1.S2_at11/111+38130870..38135049expressed protein
LOC_Os01g65140OsAffx.11741.1.S1_x_at1/111+38137619..38138978POT family protein, expressed
LOC_Os01g65140Os.32964.1.S1_at1/111+38137619..38138978POT family protein, expressed
LOC_Os01g65140OsAffx.9518.1.S1_x_at1/111+38137619..38138978POT family protein, expressed
LOC_Os01g65150Os.32964.1.S1_at11/111+38141522..38143624POT family protein, expressed
LOC_Os01g65150OsAffx.9518.1.S1_x_at1/111+38141522..38143624POT family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9321.1.S1_a_at--843--8791Chr01:38119280..38119304 (25 bp)
TGTTCGGGCTCTCCGACGTGTTCGC
LOC_Os01g65100
Os.9321.1.S1_a_at--817--8631Chr01:38119394..38119418 (25 bp)
TGGGTCACTTCTTCAGCAGCTTCAT
LOC_Os01g65100
Os.9321.1.S1_a_at--570--4011Chr01:38119530..38119554 (25 bp)
CGTCGAGCTCGTCGCGTTCGTGTTC
LOC_Os01g65100
Os.9321.1.S1_a_at--952--9411Chr01:38119553..38119577 (25 bp)
TCGTGTCGCGCGTTTACGTGTATAA
LOC_Os01g65100
Os.9321.1.S1_a_at--600--9931Chr01:38119567..38119591 (25 bp)
TACGTGTATAAGAAGAGGGTTCCTC
LOC_Os01g65100
Os.9321.1.S1_a_at--791--1451Chr01:38119579..38119603 (25 bp)
AAGAGGGTTCCTCACAACGGTTGTG
LOC_Os01g65100
Os.9321.1.S1_a_at--499--2211Chr01:38119592..38119616 (25 bp)
ACAACGGTTGTGATGTCATGTAGAA
LOC_Os01g65100
Os.9321.1.S1_a_at--825--6771Chr01:38119623..38119647 (25 bp)
GTTAGCTAGCTAATTCTTGTGCATG
LOC_Os01g65100
Os.9321.1.S1_a_at--614--3151Chr01:38119634..38119658 (25 bp)
AATTCTTGTGCATGTTCTTGTGAAA
LOC_Os01g65100
Os.9321.1.S1_a_at--420--7331Chr01:38119641..38119665 (25 bp)
GTGCATGTTCTTGTGAAATCTGAAA
LOC_Os01g65100
Os.9321.1.S1_a_at--536--2971Chr01:38119665..38119689 (25 bp)
AATGTTTGTACAGGTGATTAAATCC
LOC_Os01g65100
Target Sequence 
TGTTCGGGCTCTCCGACGTGTTCGCCATGATCGGCCTCCAGGAGTTCTTCTACGACCAGGTCCCCGACGCGCTGCACAGC
CTGGGGCTCGCCTTCTTCCTCAGCATATTCGGGGTGGGTCACTTCTTCAGCAGCTTCATCATCTCCGCCATTGACGGCGC
CACCAAGAAGAGCGGGGCGAGCTGGTTCGCCAACAACCTCAACCGCGCCCACCTCGACTACTTCTACTGGCTCCTCGCCG
GCCTCTGCGCCGTCGAGCTCGTCGCGTTCGTGTTCGTGTCGCGCGTTTACGTGTATAAGAAGAGGGTTCCTCACAACGGT
TGTGATGTCATGTAGAAGTAGAGGTTAGCTAGCTAATTCTTGTGCATGTTCTTGTGAAATCTGAAAATGTTTGTACAGGT
GATTAAATCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9321.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis