Browse Element(s) Details


Os.7646.1.S1_a_at

Description gb:AK059062.1
DB_XREF= gi:32969080
TID=Os.7646.1
CNT=18
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.7646 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative aspartate aminotransferase (P0039A07.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-021-G03, full insert sequence.
FL= gb:AK059062.1 gb:AK067545.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6509011/11aminotransferase, classes I and II family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65050NANA1+38084519..38085268hypothetical protein
LOC_Os01g65060NANA1+38087406..38089148S-domain receptor-like protein kinase, putative
LOC_Os01g65070Os.9689.1.S1_at11/111+38090281..38097251hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g65080Os.8796.2.S1_a_at11/111+38100843..38105482zinc finger family protein, putative, expressed
LOC_Os01g65090Os.7646.1.S1_a_at11/111+38106361..38109701aminotransferase, classes I and II family protein, expressed
LOC_Os01g65100Os.9321.1.S1_a_at11/111+38117333..38119737POT family protein, expressed
LOC_Os01g65110Os.32686.1.S1_at11/111+38122445..38124590POT family protein, expressed
LOC_Os01g65120OsAffx.9518.1.S1_at11/111+38127805..38129652POT family protein
LOC_Os01g65120OsAffx.9518.1.S1_x_at11/111+38127805..38129652POT family protein
LOC_Os01g65120OsAffx.11741.1.S1_x_at1/111+38127805..38129652POT family protein
LOC_Os01g65130Os.35524.1.S3_at11/111+38130870..38135049expressed protein
LOC_Os01g65130Os.35524.1.S1_at11/111+38130870..38135049expressed protein
LOC_Os01g65130Os.35524.1.S2_at11/111+38130870..38135049expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0004069molecular_functionaspartate transaminase activity
GO:0008483molecular_functiontransaminase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7646.1.S1_a_at--321--8991Chr01:38108931..38108955 (25 bp)
TGAACCTTGGCTACGCTGGTGGTGA
LOC_Os01g65090
Os.7646.1.S1_a_at--153--7751Chr01:38108951..38108975 (25 bp)
GGTGAAGCAGTCTCAACTATGGTCA
LOC_Os01g65090
Os.7646.1.S1_a_at--111--9211Chr01:38108982..38109006 (25 bp)
TCCAGGAACGTCGTGATTACCTTGT
LOC_Os01g65090
Os.7646.1.S1_a_at--102--1271Chr01:38109036..38109141 (25 bp)
AGATATCAGAGCCTCAGGGTGCCTT
LOC_Os01g65090
Os.7646.1.S1_a_at--968--7691Chr01:38109133..38109157 (25 bp)
GGGTGCCTTTTATTTGTTCATCGAC
LOC_Os01g65090
Os.7646.1.S1_a_at--429--511Chr01:38109152..38109176 (25 bp)
ATCGACTTCAGCTCCTACTATGGAT
LOC_Os01g65090
Os.7646.1.S1_a_at--874--10231Chr01:38109191..38109215 (25 bp)
TTTGGCACTATCAAGGACTCTGAGT
LOC_Os01g65090
Os.7646.1.S1_a_at--209--5571Chr01:38109238..38109355 (25 bp)
GAAAGCACAGGTTGCACTTGTCCCG
LOC_Os01g65090
Os.7646.1.S1_a_at--56--551Chr01:38109383..38109407 (25 bp)
ATCCGCATGTCATATGCTGCAGCAC
LOC_Os01g65090
Os.7646.1.S1_a_at--109--5411Chr01:38109443..38109467 (25 bp)
GAAGCTGTTGCGCTGATCAAACCCC
LOC_Os01g65090
Os.7646.1.S1_a_at--231--3291Chr01:38109460..38109484 (25 bp)
CAAACCCCGTGTTGCTGCTAAGTGA
LOC_Os01g65090
Target Sequence 
TGAACCTTGGCTACGCTGGTGGTGAAGCAGTCTCAACTATGGTCAAAGCATTCCAGGAACGTCGTGATTACCTTGTAAAA
AGTTTCAAGGAACTGCCAGGTGTGAAGATATCAGAGCCTCAGGGTGCCTTTTATTTGTTCATCGACTTCAGCTCCTACTA
TGGATCTGAAGTAGAGGGTTTTGGCACTATCAAGGACTCTGAGTCCCTCTGCATGTTCCTCTTGGAGAAAGCACAGGTTG
CACTTGTCCCGGGCGATGCATTTGGGGACGACAAATGCATCCGCATGTCATATGCTGCAGCACTATNTACGCTTCAAACT
GCTATGGAGAAAATCAAAGAAGCTGTTGCGCTGATCAAACCCCGTGTTGCTGCTAAGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7646.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis