Browse Element(s) Details


Os.9689.1.S1_at

Description gb:AK064743.1
DB_XREF= gi:32974761
TID=Os.9689.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9689 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-120-E01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-120-E01, full insert sequence.
FL= gb:AK064743.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6507011/11hydrolase, alpha/beta fold family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65010OsAffx.29815.1.S1_x_at1/111+38066314..38069570D-mannose binding lectin family protein, expressed
LOC_Os01g65030Os.52175.1.S1_at11/111+38072375..38075424D-mannose binding lectin family protein, expressed
LOC_Os01g65030OsAffx.11739.1.S1_x_at2/111+38072375..38075424D-mannose binding lectin family protein, expressed
LOC_Os01g65040OsAffx.11739.1.S1_x_at11/111+38079472..38079912hypothetical protein
LOC_Os01g65050NANA1+38084519..38085268hypothetical protein
LOC_Os01g65060NANA1+38087406..38089148S-domain receptor-like protein kinase, putative
LOC_Os01g65070Os.9689.1.S1_at11/111+38090281..38097251hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g65080Os.8796.2.S1_a_at11/111+38100843..38105482zinc finger family protein, putative, expressed
LOC_Os01g65090Os.7646.1.S1_a_at11/111+38106361..38109701aminotransferase, classes I and II family protein, expressed
LOC_Os01g65100Os.9321.1.S1_a_at11/111+38117333..38119737POT family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0003824molecular_functioncatalytic activity
GO:0008487molecular_functionprenyl-dependent CAAX protease activity
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9689.1.S1_at--818--8231Chr01:38096687..38096711 (25 bp)
GGCACAAGACCATATTTTGCGTTCT
LOC_Os01g65070
Os.9689.1.S1_at--1113--211Chr01:38096698..38096722 (25 bp)
ATATTTTGCGTTCTTCCTTGGAGTC
LOC_Os01g65070
Os.9689.1.S1_at--1103--7191Chr01:38096720..38096744 (25 bp)
GTCGTCCATCGATAAGAGCCCATAT
LOC_Os01g65070
Os.9689.1.S1_at--1090--9771Chr01:38096732..38096756 (25 bp)
TAAGAGCCCATATGTCAACGTCATG
LOC_Os01g65070
Os.9689.1.S1_at--866--1591Chr01:38096771..38096795 (25 bp)
AGCTCCGGTGACAGATGATGGCCCT
LOC_Os01g65070
Os.9689.1.S1_at--858--871Chr01:38096788..38096812 (25 bp)
ATGGCCCTTGTGATGATATCACCCC
LOC_Os01g65070
Os.9689.1.S1_at--879--1091Chr01:38096906..38096930 (25 bp)
AGTAAATGCAATGCCTTCCCAAAGC
LOC_Os01g65070
Os.9689.1.S1_at--415--8171Chr01:38096960..38096984 (25 bp)
GGAACACTACGTTGGTAAGTTTCAT
LOC_Os01g65070
Os.9689.1.S1_at--1086--10311Chr01:38096979..38097003 (25 bp)
TTTCATGAGGCCATTGCTCCAGTTA
LOC_Os01g65070
Os.9689.1.S1_at--109--3271Chr01:38097018..38097042 (25 bp)
CAACTCACTCGGTACCAGGGTAAGT
LOC_Os01g65070
Os.9689.1.S1_at--379--2851Chr01:38097039..38097063 (25 bp)
AAGTCAGTCTGGTTGCTTGCTTATA
LOC_Os01g65070
Target Sequence 
GGCACAAGACCATATTTTGCGTTCTTCCTTGGAGTCGTCCATCGATAAGAGCCCATATGTCAACGTCATGGAAGATGGAA
TGATAGCTCCGGTGACAGATGATGGCCCTTGTGATGATATCACCCCTTCTCACCAGGTTAATGACATAAAACAAGATAAT
GGGGATTTTACGCAACAGAATGAACACACCAGGGAAGCAGATGATAAAAATATCACAGAAGTAAATGCAATGCCTTCCCA
AAGCCCTGAACAGTCTGCAGGACAGCAAGTAGAGGAACACTACGTTGGTAAGTTTCATGAGGCCATTGCTCCAGTTAAGA
GATCCATAAACCAACTCACTCGGTACCAGGGTAAGTCAGTCTGGTTGCTTGCTTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9689.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis