Browse Element(s) Details


OsAffx.23920.1.S1_at

Description tigr:9629.m06462
TID=OsAffx.23920.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g651693/11POT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65110Os.32686.1.S1_at11/111+38122445..38124590POT family protein, expressed
LOC_Os01g65120OsAffx.9518.1.S1_at11/111+38127805..38129652POT family protein
LOC_Os01g65120OsAffx.9518.1.S1_x_at11/111+38127805..38129652POT family protein
LOC_Os01g65120OsAffx.11741.1.S1_x_at1/111+38127805..38129652POT family protein
LOC_Os01g65130Os.35524.1.S3_at11/111+38130870..38135049expressed protein
LOC_Os01g65130Os.35524.1.S1_at11/111+38130870..38135049expressed protein
LOC_Os01g65130Os.35524.1.S2_at11/111+38130870..38135049expressed protein
LOC_Os01g65140OsAffx.11741.1.S1_x_at1/111+38137619..38138978POT family protein, expressed
LOC_Os01g65140Os.32964.1.S1_at1/111+38137619..38138978POT family protein, expressed
LOC_Os01g65140OsAffx.9518.1.S1_x_at1/111+38137619..38138978POT family protein, expressed
LOC_Os01g65150Os.32964.1.S1_at11/111+38141522..38143624POT family protein, expressed
LOC_Os01g65150OsAffx.9518.1.S1_x_at1/111+38141522..38143624POT family protein, expressed
LOC_Os01g65169Os.53707.1.S1_x_at11/111+38148133..38153667POT family protein, expressed
LOC_Os01g65169OsAffx.23920.1.S1_at3/111+38148133..38153667POT family protein, expressed
LOC_Os01g65169OsAffx.9518.1.S1_x_at1/111+38148133..38153667POT family protein, expressed
LOC_Os01g65190OsAffx.11741.1.S1_x_at11/111+38155266..38159206POT family protein, expressed
LOC_Os01g65190Os.50574.1.S1_at1/111+38155266..38159206POT family protein, expressed
LOC_Os01g65190Os.53707.1.S1_x_at1/111+38155266..38159206POT family protein, expressed
LOC_Os01g65200Os.26151.1.S1_s_at11/111+38161048..38163757POT family protein, expressed
LOC_Os01g65200Os.33629.1.S1_a_at11/111+38161048..38163757POT family protein, expressed
LOC_Os01g65210OsAffx.23922.1.S1_at11/111+38163986..38170513POT family protein, expressed
LOC_Os01g65210Os.7141.1.S1_at11/111+38163986..38170513POT family protein, expressed
LOC_Os01g65220Os.5254.1.S1_x_at11/111+38171772..381796275'-3' exoribonuclease, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23920.1.S1_at--11--5631Chr01:38147474..38147498 (25 bp)
GACAAAGGAAGCATCTCTTTAGCCT
NONE
OsAffx.23920.1.S1_at--793--5391Chr01:38147481..38147505 (25 bp)
GAAGCATCTCTTTAGCCTTTGACAA
NONE
OsAffx.23920.1.S1_at--490--211Chr01:38147486..38147507 (22 bp)
ATCTCTTTAGCCTTTGACAAAGTTG
NONE
OsAffx.23920.1.S1_at--954--4291Chr01:38147496..38147637 (25 bp)
CCTTTGACAAAGTTGTAATTGGCAA
NONE
OsAffx.23920.1.S1_at--1097--9731Chr01:38147628..38147652 (25 bp)
TAATTGGCAACTTTACTCGTCTTAT
NONE
OsAffx.23920.1.S1_at--134--2011Chr01:38147642..38147663 (22 bp)
ACTCGTCTTATTGCAAAGATATCCG
NONE
OsAffx.23920.1.S1_at--363--10151NONE
TATTGCAAAGATATCCGTCGGGTTC
NONE
OsAffx.23920.1.S1_at--638--5131NONE
GCAAAGATATCCGTCGGGTTCCTGG
NONE
OsAffx.23920.1.S1_at--417--9111Chr01:38148560..38148584 (25 bp)
TGCTCCATCTGCTGGTCAGTTCTTT
LOC_Os01g65169
OsAffx.23920.1.S1_at--635--9111Chr01:38148569..38148593 (25 bp)
TGCTGGTCAGTTCTTTGCTTCCGAT
LOC_Os01g65169
OsAffx.23920.1.S1_at--792--8591Chr01:38148572..38148596 (25 bp)
TGGTCAGTTCTTTGCTTCCGATCCC
LOC_Os01g65169
Target Sequence 
GACAAAGGAAGCATCTCTTTAGCCTTTGACAAAGTTGTAATTGGCAACTTTACTCGTCTTATTGCAAAGATATCCGTCGG
GTTCCTGGAGCGCATCGGGTTCAACGGCGTGCAGGGCAACCTGGTGATGTACCTGAGCGGGCCGATGGGCATGTCGACGG
CGGCGGCGGCCGCCGGCGCCAACGCCTGGGGCGGGACGGTGCTGGTGCTGACGCTCGTCGGCGCGCTCGCCGCCGACTCG
CGGCTCGGGCGGTACCGGGCAATCGTGGCCGCCGGCGTGCTCCATCTGCTGGTCAGTTCTTTGCTTCCGATCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23920.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis