Browse Element(s) Details


Os.5254.1.S1_x_at

Description gb:AK100381.1
DB_XREF= gi:32985590
TID=Os.5254.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5254 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative 5-3 exoribonuclease (OSJNBb0008G24.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023085E21, full insert sequence.
FL= gb:AK100381.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6522011/115'-3' exoribonuclease, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65169Os.53707.1.S1_x_at11/111+38148133..38153667POT family protein, expressed
LOC_Os01g65169OsAffx.23920.1.S1_at3/111+38148133..38153667POT family protein, expressed
LOC_Os01g65169OsAffx.9518.1.S1_x_at1/111+38148133..38153667POT family protein, expressed
LOC_Os01g65190OsAffx.11741.1.S1_x_at11/111+38155266..38159206POT family protein, expressed
LOC_Os01g65190Os.50574.1.S1_at1/111+38155266..38159206POT family protein, expressed
LOC_Os01g65190Os.53707.1.S1_x_at1/111+38155266..38159206POT family protein, expressed
LOC_Os01g65200Os.26151.1.S1_s_at11/111+38161048..38163757POT family protein, expressed
LOC_Os01g65200Os.33629.1.S1_a_at11/111+38161048..38163757POT family protein, expressed
LOC_Os01g65210OsAffx.23922.1.S1_at11/111+38163986..38170513POT family protein, expressed
LOC_Os01g65210Os.7141.1.S1_at11/111+38163986..38170513POT family protein, expressed
LOC_Os01g65220Os.5254.1.S1_x_at11/111+38171772..381796275'-3' exoribonuclease, putative, expressed
LOC_Os01g65230Os.2328.1.S1_at11/111+38180254..38184359Protein kinase domain containing protein, expressed
LOC_Os01g65240Os.31886.1.S1_at11/111+38186938..38188979transposon protein, putative, Pong sub-class, expressed
LOC_Os01g65250OsAffx.21702.1.S1_at11/111+38189484..38191600transposon protein, putative, Pong sub-class
LOC_Os01g65260Os.30033.1.S1_at11/111+38192962..38194909Amidophosphoribosyltransferase, chloroplast precursor, putative, expressed
LOC_Os01g65270OsAffx.9516.1.S1_at11/111+38201305..38202138retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0004534molecular_function5'-3' exoribonuclease activity
GO:0008409molecular_function5'-3' exonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5254.1.S1_x_at--93--9991Chr01:38172414..38172438 (25 bp)
TACCAGCCTGCACCGTATGGAGGTG
LOC_Os01g65220
Os.5254.1.S1_x_at--1037--1511Chr01:38172371..38172395 (25 bp)
AGCAGCAACAACCTTATGGCTCCTA
LOC_Os01g65220
Os.5254.1.S1_x_at--243--10111Chr01:38172357..38172381 (25 bp)
TATGGCTCCTATGCTGGGTCAGGGC
LOC_Os01g65220
Os.5254.1.S1_x_at--895--2951Chr01:38172307..38172331 (25 bp)
AAGGCCTAATTCACGACCACAGCAG
LOC_Os01g65220
Os.5254.1.S1_x_at--299--2091Chr01:38172289..38172313 (25 bp)
ACAGCAGTCGCAGAACCGTTACAAT
LOC_Os01g65220
Os.5254.1.S1_x_at--449--9211Chr01:38172235..38172259 (25 bp)
TCCACCAGGTCATGGGCGACACTAA
LOC_Os01g65220
Os.5254.1.S1_x_at--942--9791Chr01:38172213..38172237 (25 bp)
TAAGCCCAACCTCTGTTTGTTGTAC
LOC_Os01g65220
Os.5254.1.S1_x_at--190--5971Chr01:38172150..38172174 (25 bp)
GAGAACCTCAGCCTAGTAAAACAGA
LOC_Os01g65220
Os.5254.1.S1_x_at--934--5191Chr01:38172098..38172122 (25 bp)
GCAATTTGCATAGTCTCGTGATCGA
LOC_Os01g65220
Os.5254.1.S1_x_at--966--9631Chr01:38172011..38172035 (25 bp)
TCAGATACTGGTGGCTGACTGCCGT
LOC_Os01g65220
Os.5254.1.S1_x_at--347--4231Chr01:38171990..38172014 (25 bp)
CCGTTTTTCATTTGTGGCACTCATT
LOC_Os01g65220
Target Sequence 
TACCAGCCTGCACCGTATGGAGGTGGTCAGCAGTGGCAGCAGCAGCAGCAACAACCTTATGGCTCCTATGCTGGGTCAGG
GCCTTATGGGGGTGGGGCACCTCCTGCAAGGCCTAATTCACGACCACAGCAGTCGCAGAACCGTTACAATACCTTAGATA
GGAATTCTAACAGGAGACCTCCACCAGGTCATGGGCGACACTAAGCCCAACCTCTGTTTGTTGTACCTGTGGTTTTGTTG
TTAGAAAACCTGCGTACTAAAATAGAGAACCTCAGCCTAGTAAAACAGAGAACCTCAGCTTAGAGATATATATAGAGCAA
TTTGCATAGTCTCGTGATCGACAAGCTGTTATAGCATCAAAGGTTCTAAGAGGCATGTGTTGTACAATAGAATTGTCAGT
TCATCAGATACTGGTGGCTGACTGCCGTTTTTCATTTGTGGCACTCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5254.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis