Browse Element(s) Details


Os.30033.1.S1_at

Description gb:AK070841.1
DB_XREF= gi:32980864
TID=Os.30033.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30033 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative amidophosphoribosyltransferase (OSJNBb0008G24.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023069O21, full insert sequence.
FL= gb:AK070841.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6526011/11Amidophosphoribosyltransferase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65210OsAffx.23922.1.S1_at11/111+38163986..38170513POT family protein, expressed
LOC_Os01g65210Os.7141.1.S1_at11/111+38163986..38170513POT family protein, expressed
LOC_Os01g65220Os.5254.1.S1_x_at11/111+38171772..381796275'-3' exoribonuclease, putative, expressed
LOC_Os01g65230Os.2328.1.S1_at11/111+38180254..38184359Protein kinase domain containing protein, expressed
LOC_Os01g65240Os.31886.1.S1_at11/111+38186938..38188979transposon protein, putative, Pong sub-class, expressed
LOC_Os01g65250OsAffx.21702.1.S1_at11/111+38189484..38191600transposon protein, putative, Pong sub-class
LOC_Os01g65260Os.30033.1.S1_at11/111+38192962..38194909Amidophosphoribosyltransferase, chloroplast precursor, putative, expressed
LOC_Os01g65270OsAffx.9516.1.S1_at11/111+38201305..38202138retrotransposon protein, putative, unclassified
LOC_Os01g65280OsAffx.2412.1.S1_x_at11/111+38205285..38206586hypothetical protein
LOC_Os01g65280OsAffx.2412.1.S1_at11/111+38205285..38206586hypothetical protein
LOC_Os01g65290OsAffx.12779.1.S1_at11/111+38208253..38210756retrotransposon protein, putative, unclassified
LOC_Os01g65300NANA1+38212812..38213426retrotransposon protein, putative, unclassified
LOC_Os01g65310Os.42329.1.A1_at11/111+38214459..38217304Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
LOC_Os01g65310Os.25066.1.S1_s_at11/111+38214459..38217304Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
LOC_Os01g65320Os.6400.1.S1_a_at11/111+38217483..38224296expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0009113biological_processpurine base biosynthesis
GO:0004044molecular_functionamidophosphoribosyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30033.1.S1_at--506--1631Chr01:38193445..38193469 (25 bp)
AGCGAGGGCGAGCTGATATCAAACA
LOC_Os01g65260
Os.30033.1.S1_at--851--3271Chr01:38193426..38193450 (25 bp)
CAAACAGGATGGACCTCGAGGGAGT
LOC_Os01g65260
Os.30033.1.S1_at--382--9071Chr01:38193307..38193331 (25 bp)
TGCTTCTCGCGGAATTACCCGGTGC
LOC_Os01g65260
Os.30033.1.S1_at--404--7251Chr01:38193248..38193272 (25 bp)
GTCCGCCTTCGAAGACTGACATGAA
LOC_Os01g65260
Os.30033.1.S1_at--1162--5711Chr01:38193235..38193259 (25 bp)
GACTGACATGAACTCGCAACTAGGG
LOC_Os01g65260
Os.30033.1.S1_at--304--5331Chr01:38193210..38193234 (25 bp)
GAAGTGGCTCTACTATACTCTGCAA
LOC_Os01g65260
Os.30033.1.S1_at--686--7591Chr01:38193146..38193170 (25 bp)
GGGCTTGGTGGCAATATTTGTCCTT
LOC_Os01g65260
Os.30033.1.S1_at--1129--10811Chr01:38193129..38193153 (25 bp)
TTGTCCTTGCAATTGCATTCATCAA
LOC_Os01g65260
Os.30033.1.S1_at--32--6531Chr01:38193073..38193097 (25 bp)
GATATTGATCGAGCTGATACGGTTA
LOC_Os01g65260
Os.30033.1.S1_at--480--8731Chr01:38193039..38193063 (25 bp)
TGTCTATTCATCTATTGTATTGCCA
LOC_Os01g65260
Os.30033.1.S1_at--343--5631Chr01:38192971..38192995 (25 bp)
GACACATGGTGAAAAAGTTGCCTTT
LOC_Os01g65260
Target Sequence 
AGCGAGGGCGAGCTGATATCAAACAGGATGGACCTCGAGGGAGTCCGCAGGGCGATCGGCTGCGACTCCCTCGCGTTCCT
CTCGCTCGACAAGCTCCACACCATCTATGGCGACGAGGCGCATGAGCTCTGCGACGCCTGCTTCTCGCGGAATTACCCGG
TGCTCCCCACCGTGCCGGAGCCGGTGCCGGAGTTGGTGTCCGCCTTCGAAGACTGACATGAACTCGCAACTAGGGGAAGT
GGCTCTACTATACTCTGCAATCTGCATATGCTTATATAGAAATTTTAGACTCAATTTTGGGGCTTGGTGGCAATATTTGT
CCTTGCAATTGCATTCATCAATCTGAATTTTGGGAGTAAGGTTTAGCTATTGGATATTGATCGAGCTGATACGGTTAAGT
TTGATCTGTCTATTCATCTATTGTATTGCCAATGCCATCATGGTGATGATGATGAACGAGATAATTGCTTCAATGACACA
TGGTGAAAAAGTTGCCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30033.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis