Browse Element(s) Details


Os.33629.1.S1_a_at

Description gb:AK099762.1
DB_XREF= gi:32984971
TID=Os.33629.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.33629 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains EST AU065194(E60541)~similar to oligopeptide transporter (OSJNBb0008G24.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013094H24, full insert sequence.
FL= gb:AK099762.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6520011/11POT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65140OsAffx.11741.1.S1_x_at1/111+38137619..38138978POT family protein, expressed
LOC_Os01g65140Os.32964.1.S1_at1/111+38137619..38138978POT family protein, expressed
LOC_Os01g65140OsAffx.9518.1.S1_x_at1/111+38137619..38138978POT family protein, expressed
LOC_Os01g65150Os.32964.1.S1_at11/111+38141522..38143624POT family protein, expressed
LOC_Os01g65150OsAffx.9518.1.S1_x_at1/111+38141522..38143624POT family protein, expressed
LOC_Os01g65169Os.53707.1.S1_x_at11/111+38148133..38153667POT family protein, expressed
LOC_Os01g65169OsAffx.23920.1.S1_at3/111+38148133..38153667POT family protein, expressed
LOC_Os01g65169OsAffx.9518.1.S1_x_at1/111+38148133..38153667POT family protein, expressed
LOC_Os01g65190OsAffx.11741.1.S1_x_at11/111+38155266..38159206POT family protein, expressed
LOC_Os01g65190Os.50574.1.S1_at1/111+38155266..38159206POT family protein, expressed
LOC_Os01g65190Os.53707.1.S1_x_at1/111+38155266..38159206POT family protein, expressed
LOC_Os01g65200Os.26151.1.S1_s_at11/111+38161048..38163757POT family protein, expressed
LOC_Os01g65200Os.33629.1.S1_a_at11/111+38161048..38163757POT family protein, expressed
LOC_Os01g65210OsAffx.23922.1.S1_at11/111+38163986..38170513POT family protein, expressed
LOC_Os01g65210Os.7141.1.S1_at11/111+38163986..38170513POT family protein, expressed
LOC_Os01g65220Os.5254.1.S1_x_at11/111+38171772..381796275'-3' exoribonuclease, putative, expressed
LOC_Os01g65230Os.2328.1.S1_at11/111+38180254..38184359Protein kinase domain containing protein, expressed
LOC_Os01g65240Os.31886.1.S1_at11/111+38186938..38188979transposon protein, putative, Pong sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33629.1.S1_a_at--1105--7551Chr01:38163169..38163193 (25 bp)
GGGCCTTGCTTTGTACCTGAGCATA
LOC_Os01g65200
Os.33629.1.S1_a_at--560--4951Chr01:38163189..38163213 (25 bp)
GCATATTTGGGATTGGGAGCTTCAT
LOC_Os01g65200
Os.33629.1.S1_a_at--40--411Chr01:38163212..38163236 (25 bp)
ATCAGCAGCTTTCTTGTGTATGCAA
LOC_Os01g65200
Os.33629.1.S1_a_at--632--10751Chr01:38163237..38163261 (25 bp)
TTGACAAGGTGACCAGCATGACTGG
LOC_Os01g65200
Os.33629.1.S1_a_at--657--6491Chr01:38163263..38163287 (25 bp)
GATAGCTGGTTCTCGGACAATCTGA
LOC_Os01g65200
Os.33629.1.S1_a_at--33--3191Chr01:38163280..38163304 (25 bp)
CAATCTGAACCGAGGTCATCTTGAT
LOC_Os01g65200
Os.33629.1.S1_a_at--78--7831Chr01:38163293..38163317 (25 bp)
GGTCATCTTGATTACTTCTACTGGC
LOC_Os01g65200
Os.33629.1.S1_a_at--626--9891Chr01:38163305..38163329 (25 bp)
TACTTCTACTGGCTATTGGCTGTGC
LOC_Os01g65200
Os.33629.1.S1_a_at--596--1111Chr01:38163332..38163356 (25 bp)
AGTGTTCTTGGTTTAGCTGCTTATC
LOC_Os01g65200
Os.33629.1.S1_a_at--774--1591Chr01:38163346..38163370 (25 bp)
AGCTGCTTATCTACACTTTTCGCGA
LOC_Os01g65200
Os.33629.1.S1_a_at--741--2031Chr01:38163360..38163384 (25 bp)
ACTTTTCGCGAGTGTATGTCCACAA
LOC_Os01g65200
Target Sequence 
GGGCCTTGCTTTGTACCTGAGCATATTTGGGATTGGGAGCTTCATCAGCAGCTTTCTTGTGTATGCAATTGACAAGGTGA
CCAGCATGACTGGGGATAGCTGGTTCTCGGACAATCTGAACCGAGGTCATCTTGATTACTTCTACTGGCTATTGGCTGTG
CTNCAGTGTTCTTGGTTTAGCTGCTTATCTACACTTTTCGCGAGTGTATGTCCACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33629.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis