Browse Element(s) Details


Os.9187.1.S1_at

Description gb:NM_190821.1
DB_XREF= gi:34908725
GEN=P0491F11.23
TID=Os.9187.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.9187 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0491F11.23 (P0491F11.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0491F11.23 (P0491F11.23), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6533011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65270OsAffx.9516.1.S1_at11/111+38201305..38202138retrotransposon protein, putative, unclassified
LOC_Os01g65280OsAffx.2412.1.S1_x_at11/111+38205285..38206586hypothetical protein
LOC_Os01g65280OsAffx.2412.1.S1_at11/111+38205285..38206586hypothetical protein
LOC_Os01g65290OsAffx.12779.1.S1_at11/111+38208253..38210756retrotransposon protein, putative, unclassified
LOC_Os01g65300NANA1+38212812..38213426retrotransposon protein, putative, unclassified
LOC_Os01g65310Os.42329.1.A1_at11/111+38214459..38217304Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
LOC_Os01g65310Os.25066.1.S1_s_at11/111+38214459..38217304Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
LOC_Os01g65320Os.6400.1.S1_a_at11/111+38217483..38224296expressed protein
LOC_Os01g65330Os.9187.1.S1_at11/111+38225796..38233007expressed protein
LOC_Os01g65340OsAffx.9633.1.S1_at11/111+38237371..38238205hypothetical protein
LOC_Os01g65350Os.24883.1.S1_s_at11/111+38241611..38245814deoxynucleoside kinase family, putative, expressed
LOC_Os01g65350Os.54011.1.S1_at11/111+38241611..38245814deoxynucleoside kinase family, putative, expressed
LOC_Os01g65350Os.27339.1.S1_at1/111+38241611..38245814deoxynucleoside kinase family, putative, expressed
LOC_Os01g65360OsAffx.23923.1.S1_at11/111+38254254..38256080hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9187.1.S1_at--395--951Chr01:38226616..38226640 (25 bp)
AGGACAAATGGACCTGACCCGAATT
LOC_Os01g65330
Os.9187.1.S1_at--678--5811Chr01:38226601..38226625 (25 bp)
GACCCGAATTGAGACACTGTACCAT
LOC_Os01g65330
Os.9187.1.S1_at--234--5831Chr01:38226562..38226586 (25 bp)
GACCGAAACACATATCCTCGAGCTT
LOC_Os01g65330
Os.9187.1.S1_at--922--9371Chr01:38226545..38226569 (25 bp)
TCGAGCTTGTTGCATGGCTTCATCA
LOC_Os01g65330
Os.9187.1.S1_at--764--8291Chr01:38226530..38226554 (25 bp)
GGCTTCATCATCTTATTAGTCGATC
LOC_Os01g65330
Os.9187.1.S1_at--1065--1131Chr01:38226513..38226537 (25 bp)
AGTCGATCTAAATCCGCTAATGGCG
LOC_Os01g65330
Os.9187.1.S1_at--704--9771Chr01:38226496..38226520 (25 bp)
TAATGGCGAGCGGTCTCCCATCAAA
LOC_Os01g65330
Os.9187.1.S1_at--983--371Chr01:38226477..38226501 (25 bp)
ATCAAATCTCCTGTTCGATCGCCTA
LOC_Os01g65330
Os.9187.1.S1_at--739--5591Chr01:38226346..38226370 (25 bp)
GAAATTCATCCCTGGTATAAGCAAA
LOC_Os01g65330
Os.9187.1.S1_at--399--291Chr01:38226263..38226287 (25 bp)
ATAGTCACTCACCAAGCAGTGGCAA
LOC_Os01g65330
Os.9187.1.S1_at--861--3051Chr01:38226220..38226244 (25 bp)
AATCAGGAGGATGCTTCCTGTCATC
LOC_Os01g65330
Target Sequence 
AGGACAAATGGACCTGACCCGAATTGAGACACTGTACCATGCTGACAAAGAAAAGACCGAAACACATATCCTCGAGCTTG
TTGCATGGCTTCATCATCTTATTAGTCGATCTAAATCCGCTAATGGCGAGCGGTCTCCCATCAAATCTCCTGTTCGATCG
CCTACACAAAGGGGCCATACAATCACATTATCTCCAAACAAAGCCAGCAGCAATTCATCACCTCTTCTTACCCAAGAAGA
TCAAGATATGCTAAGGGATGTCAAGTACAGGAAATTCATCCCTGGTATAAGCAAAAGCCAAGAGTTCGAGACTAAGTCCA
GACATAGCAAGCAAAGCAGGTTGAGCAAAAGTAATAGTCACTCACCAAGCAGTGGCAACATGAAAGAGTTGCTATCAATC
AGGAGGATGCTTCCTGTCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9187.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis