Browse Element(s) Details


OsAffx.9633.1.S1_at

Description tigr:9629.m06480
TID=OsAffx.9633.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6534011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65300NANA1+38212812..38213426retrotransposon protein, putative, unclassified
LOC_Os01g65310Os.42329.1.A1_at11/111+38214459..38217304Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
LOC_Os01g65310Os.25066.1.S1_s_at11/111+38214459..38217304Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
LOC_Os01g65320Os.6400.1.S1_a_at11/111+38217483..38224296expressed protein
LOC_Os01g65330Os.9187.1.S1_at11/111+38225796..38233007expressed protein
LOC_Os01g65340OsAffx.9633.1.S1_at11/111+38237371..38238205hypothetical protein
LOC_Os01g65350Os.24883.1.S1_s_at11/111+38241611..38245814deoxynucleoside kinase family, putative, expressed
LOC_Os01g65350Os.54011.1.S1_at11/111+38241611..38245814deoxynucleoside kinase family, putative, expressed
LOC_Os01g65350Os.27339.1.S1_at1/111+38241611..38245814deoxynucleoside kinase family, putative, expressed
LOC_Os01g65360OsAffx.23923.1.S1_at11/111+38254254..38256080hypothetical protein
LOC_Os01g65370Os.37103.1.S1_at11/111+38259107..38260222Myb-like DNA-binding domain containing protein
LOC_Os01g65370Os.57514.1.S1_x_at7/111+38259107..38260222Myb-like DNA-binding domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9633.1.S1_at--795--7231Chr01:38237422..38237446 (25 bp)
GTCGCGTGGCATATCGCATTATTGT
LOC_Os01g65340
OsAffx.9633.1.S1_at--1076--4111Chr01:38237436..38237460 (25 bp)
CGCATTATTGTTTCTGTGGACGCAG
LOC_Os01g65340
OsAffx.9633.1.S1_at--645--5851Chr01:38237460..38237484 (25 bp)
GACCAAGTCCAAAACGATCGAGCAG
LOC_Os01g65340
OsAffx.9633.1.S1_at--749--3611Chr01:38237501..38237525 (25 bp)
CTTGGTTCGGTGTGCAGACTATTGA
LOC_Os01g65340
OsAffx.9633.1.S1_at--183--5051Chr01:38237514..38237538 (25 bp)
GCAGACTATTGACAGGTTCGAGATC
LOC_Os01g65340
OsAffx.9633.1.S1_at--729--1011Chr01:38237527..38237551 (25 bp)
AGGTTCGAGATCACTGACGACCAGA
LOC_Os01g65340
OsAffx.9633.1.S1_at--762--8831Chr01:38237541..38237983 (25 bp)
TGACGACCAGAACATATTTCCATTG
LOC_Os01g65340
OsAffx.9633.1.S1_at--889--191Chr01:38237974..38237998 (25 bp)
ATTTCCATTGGCAAATACGTGCGAC
LOC_Os01g65340
OsAffx.9633.1.S1_at--933--251Chr01:38238013..38238037 (25 bp)
ATATGCGAGGGATCGGCAGCGCATC
LOC_Os01g65340
OsAffx.9633.1.S1_at--534--4591Chr01:38238100..38238124 (25 bp)
GCGAAGGATGCTCTACCGTGTAGTA
LOC_Os01g65340
OsAffx.9633.1.S1_at--18--6951Chr01:38238119..38238143 (25 bp)
GTAGTAGCATCACCGGTGTTGCCAA
LOC_Os01g65340
Target Sequence 
GTCGCGTGGCATATCGCATTATTGTTTCTGTGGACGCAGACCAAGTCCAAAACGATCGAGCAGGGTGTCGGGTTGGTTTC
TTGGTTCGGTGTGCAGACTATTGACAGGTTCGAGATCACTGACGACCAGAACATATTTCCATTGGCAAATACGTGCGACG
GTGAAGACCGAAGATATGCGAGGGATCGGCAGCGCATCACCTCGCCGGTGTTCTGGCGGTTGGGTGGAATGGAGATCGCC
GGCGAGATGCTGACACGGCGGCGAAGGATGCTCTACCGTGTAGTAGCATCACCGGTGTTGCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9633.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis