Browse Element(s) Details


Os.42688.1.S1_x_at

Description gb:BE040411
DB_XREF= gi:8335487
DB_XREF=OE05F11
TID=Os.42688.1
CNT=6
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.42688 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative beta-D-galactosidase (P0648C09.21), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g654609/11Beta-galactosidase precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65420Os.37438.1.S1_at11/111+38295821..38297183expressed protein
LOC_Os01g65440Os.26484.1.S1_at11/111+38309698..38312558universal stress protein family protein, expressed
LOC_Os01g65450Os.16536.1.S1_at11/111+38313689..38318627expressed protein
LOC_Os01g65460Os.9892.1.S1_a_at11/111+38321362..38328433Beta-galactosidase precursor, putative, expressed
LOC_Os01g65460Os.9892.2.S1_at11/111+38321362..38328433Beta-galactosidase precursor, putative, expressed
LOC_Os01g65460Os.42688.1.S1_x_at9/111+38321362..38328433Beta-galactosidase precursor, putative, expressed
LOC_Os01g65470OsAffx.31174.5.S1_x_at11/111+38332742..38333489hypothetical protein
LOC_Os01g65470OsAffx.31174.4.S1_x_at5/111+38332742..38333489hypothetical protein
LOC_Os01g65480Os.8452.1.S1_at11/111+38336490..38339127DnaJ domain containing protein, expressed
LOC_Os01g65490Os.32122.1.S1_x_at11/111+38339648..38341148expressed protein
LOC_Os01g65490Os.32122.1.S1_at11/111+38339648..38341148expressed protein
LOC_Os01g65490Os.32122.2.S1_at1/111+38339648..38341148expressed protein
LOC_Os01g65500NANA1+38344981..38348540Chloride channel protein CLC-c, putative
LOC_Os01g65510Os.15941.2.S1_x_at11/111+38349637..38350989F-box domain containing protein, expressed
LOC_Os01g65510OsAffx.15285.1.S1_at1/111+38349637..38350989F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004565molecular_functionbeta-galactosidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.42688.1.S1_x_at--107--2571Chr01:38326776..38326800 (25 bp)
AACTGTGGCAAGTGTGTGCTCCTTC
LOC_Os01g65460
Os.42688.1.S1_x_at--616--5091Chr01:38326809..38326833 (25 bp)
GCACTACCCTTCCATTGACTTGGAA
LOC_Os01g65460
Os.42688.1.S1_x_at--960--3271Chr01:38326874..38326898 (25 bp)
CAAAAGTACAGTTGTCTTGCCCCAA
LOC_Os01g65460
Os.42688.1.S1_x_at--221--6911NONE
GTATCTCTTCTGTTAAGTTTGCGAG
NONE
Os.42688.1.S1_x_at--186--9371Chr01:38326933..38326957 (25 bp)
TTTGGAAACCCCAGTGGAACCTGCA
LOC_Os01g65460
Os.42688.1.S1_x_at--815--8171Chr01:38326948..38326972 (25 bp)
GGAACCTGCAGATCTTACCAACAAG
LOC_Os01g65460
Os.42688.1.S1_x_at--618--7691Chr01:38327427..38327451 (25 bp)
GGGTCACCAAAACACTTGCGATTGA
LOC_Os01g65460
Os.42688.1.S1_x_at--678--8671Chr01:38327449..38327473 (25 bp)
TGAGGCAGACTGCTCTTAAGGAGTT
LOC_Os01g65460
Os.42688.1.S1_x_at--632--5171Chr01:38327481..38327505 (25 bp)
GCAATGAGATCCATCGCTACAGATT
LOC_Os01g65460
Os.42688.1.S1_x_at--876--6551Chr01:38327586..38327608 (23 bp)
GATTACGACCTGTTATGAGCATGGA
LOC_Os01g65460
Os.42688.1.S1_x_at--758--8911NONE
TGAGCATGGATTGGCACTTTGTTTC
NONE
Target Sequence 
AACTGTGGCAAGTGTGTGCTCCTTCGTGTCAGAGCACTACCCTTCCATTGACTTGGAATCCTGGGATAGGAATACCCAAA
ATGATGGTAGAGACGCAGCAAAAGTACAGTTGTCTTGCCCCAAGGGTAAAAGTATCTCTTCTGTTAAGTTTGCGAGTTTT
GGAAACCCCAGTGGAACCTGCAGATCTTACCAACAAGGAAGCTGCCACCATCCGAACTCAATATCTGTTGTTGAGAAGGN
NNNNNNNNNNNNNNNNNNNNNNNNNNCCTGTCTGAACATGAATGGCTGTACCNTCTCCTTGTCAGACGAGGGATTTGGAG
AAGATTTATGCCCTGGGGTCACCAAAACACTTGCGATTGAGGCAGACTGCTCTTAAGGAGTTTAACTCAGCAATGAGATC
CATCGCTACAGATTNCGCTCATCAACTTGAAGCTTATAGNGCTTGGTACAGTAGCATACTACAACAACNTCGAAGTGAAA
TCCTACCTAGATTTAGATTACGACCTGTTATGAGCATGGATTGGCACTTTGTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.42688.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis