Browse Element(s) Details


OsAffx.15285.1.S1_at

Description tigr:9634.m00550
TID=OsAffx.15285.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to gene_id:K15I22.12
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0623010/11GDSL-motif lipase/hydrolase family protein, putative
LOC_Os01g655101/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g06160Os.10766.1.A1_at11/116+2854454..2858561calmodulin-binding family protein, putative, expressed
LOC_Os06g06170OsAffx.27469.1.S1_at11/116+2858872..2860407expressed protein
LOC_Os06g06180OsAffx.15284.1.S1_at11/116+2860701..2862180Transferase family protein, expressed
LOC_Os06g06190Os.17072.1.S1_at11/116+2862463..2866679ATPase, putative, expressed
LOC_Os06g06190Os.9035.1.S1_at1/116+2862463..2866679ATPase, putative, expressed
LOC_Os06g06200NANA6+2869178..2871701retrotransposon protein, putative, LINE subclass
LOC_Os06g06210Os.14672.1.S2_at11/116+2873385..2876068expressed protein
LOC_Os06g06210Os.14672.1.S1_at10/116+2873385..2876068expressed protein
LOC_Os06g06220OsAffx.4739.1.S1_at11/116+2876441..2876707hypothetical protein
LOC_Os06g06230OsAffx.15285.1.S1_at10/116+2882907..2883915GDSL-motif lipase/hydrolase family protein, putative
LOC_Os06g06240OsAffx.15286.1.S1_at11/116+2885336..2886343hypothetical protein
LOC_Os06g06240OsAffx.15286.1.S1_x_at11/116+2885336..2886343hypothetical protein
LOC_Os06g06250Os.10772.1.S1_x_at11/116+2892695..2894828GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g06250Os.10772.1.S1_at11/116+2892695..2894828GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g06260Os.54974.1.S1_x_at11/116+2897788..2899607GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g06260Os.54974.1.S1_at11/116+2897788..2899607GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g06270OsAffx.15287.1.S1_at11/116+2899816..2900142hypothetical protein
LOC_Os06g06280Os.11577.1.S1_a_at11/116+2901284..2906303galactosyltransferase family protein, putative, expressed
LOC_Os06g06280OsAffx.8676.1.S1_at1/116+2901284..2906303galactosyltransferase family protein, putative, expressed
LOC_Os06g06290Os.12029.1.S1_a_at10/116+2907034..2909907GDSL-like Lipase/Acylhydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15285.1.S1_at--335--7251Chr06:2883547..2883567 (21 bp)
GTCCGGTACCAGTACGGCGGCGATT
LOC_Os06g06230
OsAffx.15285.1.S1_at--335--6031Chr06:2883508..2883532 (25 bp)
GAGAGGACGAACGAGTCGGCCGGCG
LOC_Os06g06230
OsAffx.15285.1.S1_at--215--9151Chr06:2883448..2883472 (25 bp)
TGCGGGCTGAGGGTCATCGACATCT
LOC_Os06g06230
OsAffx.15285.1.S1_at--334--8891Chr06:2883441..2883465 (25 bp)
TGAGGGTCATCGACATCTGGTCCAA
LOC_Os06g06230
OsAffx.15285.1.S1_at--212--7691Chr06:2883438..2883462 (25 bp)
GGGTCATCGACATCTGGTCCAAGAT
LOC_Os06g06230
OsAffx.15285.1.S1_at--200--491Chr06:2883427..2883451 (25 bp)
ATCTGGTCCAAGATGCAGCGATTCC
LOC_Os06g06230
OsAffx.15285.1.S1_at--183--2811Chr06:2883418..2883442 (25 bp)
AAGATGCAGCGATTCCCCGGCTGGG
LOC_Os06g06230
OsAffx.15285.1.S1_at--732--4191Chr06:2883403..2883427 (25 bp)
CCCGGCTGGGAGAGCTCATTCTTGA
LOC_Os06g06230
OsAffx.15285.1.S1_at--669--9591NONE
TCATTCTTGAGGGACGGGCTGCACC
NONE
OsAffx.15285.1.S1_at--472--1832Chr06:2883026..2883050 (25 bp)
ACGCCGCGCGGGAACAGGGTGGTGT
LOC_Os06g06230
OsAffx.15285.1.S1_at--242--2931Chr06:2882978..2883002 (25 bp)
AAGGACGCCAGCCTTGGCCTCGAAG
LOC_Os06g06230
Target Sequence 
GTCCGGTACCAGTACGGCGGCGATTGCGCCGGCTTGCCGGAGAGGACGAACGAGTCGGCCGGCGCGTACGCGCGCGCCTG
CGTCGAGGTGGCGGCGGAGTGCGGGCTGAGGGTCATCGACATCTGGTCCAAGATGCAGCGATTCCCCGGCTGGGAGAGCT
CATTCTTGAGGGACGGGCTGCACCTGACGCCGCGCGGGAACAGGGTGGTGTTCGAGGAGGTGGTGTTCGCGCTCAAGGAC
GCCAGCCTTGGCCTCGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15285.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis