Browse Element(s) Details


Os.14672.1.S1_at

Description gb:AK060403.1
DB_XREF= gi:32970421
TID=Os.14672.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14672 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033074E11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-010-C08, full insert sequence.
FL= gb:AK073997.1 gb:AK060403.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0621010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g06160Os.10766.1.A1_at11/116+2854454..2858561calmodulin-binding family protein, putative, expressed
LOC_Os06g06170OsAffx.27469.1.S1_at11/116+2858872..2860407expressed protein
LOC_Os06g06180OsAffx.15284.1.S1_at11/116+2860701..2862180Transferase family protein, expressed
LOC_Os06g06190Os.17072.1.S1_at11/116+2862463..2866679ATPase, putative, expressed
LOC_Os06g06190Os.9035.1.S1_at1/116+2862463..2866679ATPase, putative, expressed
LOC_Os06g06200NANA6+2869178..2871701retrotransposon protein, putative, LINE subclass
LOC_Os06g06210Os.14672.1.S2_at11/116+2873385..2876068expressed protein
LOC_Os06g06210Os.14672.1.S1_at10/116+2873385..2876068expressed protein
LOC_Os06g06220OsAffx.4739.1.S1_at11/116+2876441..2876707hypothetical protein
LOC_Os06g06230OsAffx.15285.1.S1_at10/116+2882907..2883915GDSL-motif lipase/hydrolase family protein, putative
LOC_Os06g06240OsAffx.15286.1.S1_at11/116+2885336..2886343hypothetical protein
LOC_Os06g06240OsAffx.15286.1.S1_x_at11/116+2885336..2886343hypothetical protein
LOC_Os06g06250Os.10772.1.S1_x_at11/116+2892695..2894828GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g06250Os.10772.1.S1_at11/116+2892695..2894828GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g06260Os.54974.1.S1_x_at11/116+2897788..2899607GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g06260Os.54974.1.S1_at11/116+2897788..2899607GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g06270OsAffx.15287.1.S1_at11/116+2899816..2900142hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14672.1.S1_at--687--6471Chr06:2873843..2873867 (25 bp)
GATACTGGTATGAATTCCGCTACGA
LOC_Os06g06210
Os.14672.1.S1_at--194--8011Chr06:2873868..2873892 (25 bp)
GGATGGAAATCCTTACTACGCTGCT
LOC_Os06g06210
Os.14672.1.S1_at--828--7551Chr06:2874013..2874037 (25 bp)
GGGCCATGTCATTTGGATCCAGATA
LOC_Os06g06210
Os.14672.1.S1_at--298--9231Chr06:2874030..2874054 (25 bp)
TCCAGATATCCTGTCGACGGAGCAT
LOC_Os06g06210
Os.14672.1.S1_at--1033--71NONE
ATTGCCCCAGCTGCCAAAGTGGAAA
NONE
Os.14672.1.S1_at--983--931Chr06:2874585..2874609 (25 bp)
AGGAATGAACCTTGTCGGCGTGCAA
LOC_Os06g06210
Os.14672.1.S1_at--428--7191Chr06:2874598..2874622 (25 bp)
GTCGGCGTGCAATCCAGGTGTATGA
LOC_Os06g06210
Os.14672.1.S1_at--810--411Chr06:2874709..2874733 (25 bp)
ATCATGTCTTTCAATACTCGAGGGA
LOC_Os06g06210
Os.14672.1.S1_at--876--5611Chr06:2874732..2874756 (25 bp)
GACAAACCATATAAGCTTCGGCCGG
LOC_Os06g06210
Os.14672.1.S1_at--836--1551Chr06:2874745..2874769 (25 bp)
AGCTTCGGCCGGTGAGAGATTTCAT
LOC_Os06g06210
Os.14672.1.S1_at--1143--5652Chr06:2874846..2874870 (25 bp)
GACATAAATCTATCTCCTTTTTGAA
LOC_Os06g06210
Target Sequence 
GATACTGGTATGAATTCCGCTACGAGGATGGAAATCCTTACTACGCTGCTGAGAGGGAGGAGAGATGGGAGAATCAGGTT
ATGGAGCAAATGAAGTTCACAGTATCAATTGCAAAGCAACGACAAAATGATTTCTTTTGTCCTATTTTTGAGGGGTCTCT
ACATGTTGAAGGGCCATGTCATTTGGATCCAGATATCCTGTCGACGGAGCATCTATTGCCCCAGCTGCCAAAGTGGAAAA
ATCGTTGGGTAAATGGATACAACCACAGGAATGAACCTTGTCGGCGTGCAATCCAGGTGTATGATTTGNATGTATCGTCC
CCCCATGATGAACCAATGGAGATCTACGGTATATTTGCATTTAGAGATGTACGAAACAACCAACAACGTAATCATGTCTT
TCAATACTCGAGGGACAAACCATATAAGCTTCGGCCGGTGAGAGATTTCATGACTAAGTTTGTTTTGTTTATACCTTTTG
TCTTAAAAGGGTCCCCTCCTTTTCTGTAGTTGTGCTCTTTAAACTTTGACATAAATCTATCTCCTTTTTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14672.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis