Browse Element(s) Details


Os.10772.1.S1_x_at

Description gb:AK121780.1
DB_XREF= gi:37991403
TID=Os.10772.1
CNT=29
FEA=FLmRNA
TIER=FL+Stack
STK=9
UG=Os.10772 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-044-H08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033093M11, full insert sequence.
FL= gb:AK121780.1 gb:AK104883.1 gb:AK104394.1 gb:AK061497.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0625011/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g06200NANA6+2869178..2871701retrotransposon protein, putative, LINE subclass
LOC_Os06g06210Os.14672.1.S2_at11/116+2873385..2876068expressed protein
LOC_Os06g06210Os.14672.1.S1_at10/116+2873385..2876068expressed protein
LOC_Os06g06220OsAffx.4739.1.S1_at11/116+2876441..2876707hypothetical protein
LOC_Os06g06230OsAffx.15285.1.S1_at10/116+2882907..2883915GDSL-motif lipase/hydrolase family protein, putative
LOC_Os06g06240OsAffx.15286.1.S1_at11/116+2885336..2886343hypothetical protein
LOC_Os06g06240OsAffx.15286.1.S1_x_at11/116+2885336..2886343hypothetical protein
LOC_Os06g06250Os.10772.1.S1_x_at11/116+2892695..2894828GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g06250Os.10772.1.S1_at11/116+2892695..2894828GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g06260Os.54974.1.S1_x_at11/116+2897788..2899607GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g06260Os.54974.1.S1_at11/116+2897788..2899607GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g06270OsAffx.15287.1.S1_at11/116+2899816..2900142hypothetical protein
LOC_Os06g06280Os.11577.1.S1_a_at11/116+2901284..2906303galactosyltransferase family protein, putative, expressed
LOC_Os06g06280OsAffx.8676.1.S1_at1/116+2901284..2906303galactosyltransferase family protein, putative, expressed
LOC_Os06g06290Os.12029.1.S1_a_at10/116+2907034..2909907GDSL-like Lipase/Acylhydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10772.1.S1_x_at--641--9191Chr06:2893760..2893784 (25 bp)
TCCAGAGCAAGTACCCCTGGGCTCG
LOC_Os06g06250
Os.10772.1.S1_x_at--756--9951Chr06:2893771..2893795 (25 bp)
TACCCCTGGGCTCGCATCATGTACG
LOC_Os06g06250
Os.10772.1.S1_x_at--12--3811Chr06:2893836..2894322 (25 bp)
CTCCAACTACGGGTTTAGCACGAAT
LOC_Os06g06250
Os.10772.1.S1_x_at--1049--1711Chr06:2894308..2894328 (21 bp)
CTACGGGTTTAGCACGAATTTGAGG
LOC_Os06g06250
Os.10772.1.S1_x_at--831--10011Chr06:2894313..2894337 (25 bp)
TAGCACGAATTTGAGGGCGTGCTGC
LOC_Os06g06250
Os.10772.1.S1_x_at--850--1151Chr06:2894354..2894378 (25 bp)
AGTACAACTACCAGAACGGCGCGAG
LOC_Os06g06250
Os.10772.1.S1_x_at--1014--1431Chr06:2894366..2894390 (25 bp)
AGAACGGCGCGAGGTGCGGCATGTC
LOC_Os06g06250
Os.10772.1.S1_x_at--669--7191Chr06:2894388..2894412 (25 bp)
GTCGGGAGCCTACGCGTGCTCCAAC
LOC_Os06g06250
Os.10772.1.S1_x_at--985--891Chr06:2894453..2894477 (25 bp)
AGGCGGCGTACAAGCAGATCGCCGA
LOC_Os06g06250
Os.10772.1.S1_x_at--699--1511Chr06:2894465..2894489 (25 bp)
AGCAGATCGCCGACGGGTGGGTCAA
LOC_Os06g06250
Os.10772.1.S1_x_at--928--871Chr06:2894557..2894581 (25 bp)
ATGGCCGGCTAGCTGCTGCTGATTT
LOC_Os06g06250
Target Sequence 
TCCAGAGCAAGTACCCCTGGGCTCGCATCATGTACGCCGACTTCTACTCCCACGTCTACGACATGGTCAAATCCCCCTCC
AACTACGGGTTTAGCACGAATTTGAGGGCGTGCTGCGGGGCGGGAGGAGGGAAGTACAACTACCAGAACGGCGCGAGGTG
CGGCATGTCGGGAGCCTACGCGTGCTCCAACCCGTCGTCGTCGTTGAGCTGGGACGGCATCCATCTCACGGAGGCGGCGT
ACAAGCAGATCGCCGACGGGTGGGTCAACGGGCCCTACTGCCACCCGCCGATCATGNCCTAGATCATCGCCGGCGGCGGC
GACGGCGGCCGGAGGATGGCCGGCTAGCTGCTGCTGATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10772.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis