Browse Element(s) Details

OsAffx.15287.1.S1_at

Description

tigr:9634.m00554
TID=OsAffx.15287.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=zinc binding domain (DUF701), putative
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g06270	11/11	hypothetical protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g06210	Os.14672.1.S2_at	11/11	6	+	2873385..2876068	expressed protein
LOC_Os06g06210	Os.14672.1.S1_at	10/11	6	+	2873385..2876068	expressed protein
LOC_Os06g06220	OsAffx.4739.1.S1_at	11/11	6	+	2876441..2876707	hypothetical protein
LOC_Os06g06230	OsAffx.15285.1.S1_at	10/11	6	+	2882907..2883915	GDSL-motif lipase/hydrolase family protein, putative
LOC_Os06g06240	OsAffx.15286.1.S1_at	11/11	6	+	2885336..2886343	hypothetical protein
LOC_Os06g06240	OsAffx.15286.1.S1_x_at	11/11	6	+	2885336..2886343	hypothetical protein
LOC_Os06g06250	Os.10772.1.S1_x_at	11/11	6	+	2892695..2894828	GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g06250	Os.10772.1.S1_at	11/11	6	+	2892695..2894828	GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g06260	Os.54974.1.S1_x_at	11/11	6	+	2897788..2899607	GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g06260	Os.54974.1.S1_at	11/11	6	+	2897788..2899607	GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g06270	OsAffx.15287.1.S1_at	11/11	6	+	2899816..2900142	hypothetical protein
LOC_Os06g06280	Os.11577.1.S1_a_at	11/11	6	+	2901284..2906303	galactosyltransferase family protein, putative, expressed
LOC_Os06g06280	OsAffx.8676.1.S1_at	1/11	6	+	2901284..2906303	galactosyltransferase family protein, putative, expressed
LOC_Os06g06290	Os.12029.1.S1_a_at	10/11	6	+	2907034..2909907	GDSL-like Lipase/Acylhydrolase family protein, expressed

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.15287.1.S1_at--492--855	1	Chr06:2899880..2899904 (25 bp)	TGGAGACGGCGTTCAGCTGCCCGTT	LOC_Os06g06270
OsAffx.15287.1.S1_at--1122--965	1	Chr06:2899892..2899916 (25 bp)	TCAGCTGCCCGTTCTGCGACCACGG	LOC_Os06g06270
OsAffx.15287.1.S1_at--279--53	1	Chr06:2899936..2899960 (25 bp)	ATCGACATCAAGCACATGATCGCCG	LOC_Os06g06270
OsAffx.15287.1.S1_at--834--885	2	Chr06:2899952..2899976 (25 bp)	TGATCGCCGAGGCCTCCTGCTTCGT	LOC_Os06g06270
OsAffx.15287.1.S1_at--637--907	1	Chr06:2899969..2899993 (25 bp)	TGCTTCGTCTGCCAGGCGCGCTACT	LOC_Os06g06270
OsAffx.15287.1.S1_at--935--417	1	Chr06:2900020..2900044 (25 bp)	CCCATCGACGTCTACAGCGAGTGGA	LOC_Os06g06270
OsAffx.15287.1.S1_at--357--53	1	Chr06:2900023..2900047 (25 bp)	ATCGACGTCTACAGCGAGTGGATCG	LOC_Os06g06270
OsAffx.15287.1.S1_at--284--577	1	Chr06:2900026..2900050 (25 bp)	GACGTCTACAGCGAGTGGATCGACC	LOC_Os06g06270
OsAffx.15287.1.S1_at--958--713	1	Chr06:2900029..2900053 (25 bp)	GTCTACAGCGAGTGGATCGACCAGT	LOC_Os06g06270
OsAffx.15287.1.S1_at--920--215	1	Chr06:2900033..2900057 (25 bp)	ACAGCGAGTGGATCGACCAGTGCGA	LOC_Os06g06270
OsAffx.15287.1.S1_at--566--407	1	Chr06:2900037..2900061 (25 bp)	CGAGTGGATCGACCAGTGCGAGCTC	LOC_Os06g06270

Target Sequence

TGGAGACGGCGTTCAGCTGCCCGTTCTGCGACCACGGCGGCGCGGTGGAGTGCAGCATCGACATCAAGCACATGATCGCC
GAGGCCTCCTGCTTCGTCTGCCAGGCGCGCTACTCCACCACCGCCCACGCGCTCACCGAGCCCATCGACGTCTACAGCGA
GTGGATCGACCAGTGCGAGCTC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis