Browse Element(s) Details


Os.54974.1.S1_at

Description gb:AK107226.1
DB_XREF= gi:32992435
TID=Os.54974.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54974 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-125-D10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-125-D10, full insert sequence.
FL= gb:AK107226.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0626011/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g06210Os.14672.1.S2_at11/116+2873385..2876068expressed protein
LOC_Os06g06210Os.14672.1.S1_at10/116+2873385..2876068expressed protein
LOC_Os06g06220OsAffx.4739.1.S1_at11/116+2876441..2876707hypothetical protein
LOC_Os06g06230OsAffx.15285.1.S1_at10/116+2882907..2883915GDSL-motif lipase/hydrolase family protein, putative
LOC_Os06g06240OsAffx.15286.1.S1_at11/116+2885336..2886343hypothetical protein
LOC_Os06g06240OsAffx.15286.1.S1_x_at11/116+2885336..2886343hypothetical protein
LOC_Os06g06250Os.10772.1.S1_x_at11/116+2892695..2894828GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g06250Os.10772.1.S1_at11/116+2892695..2894828GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g06260Os.54974.1.S1_x_at11/116+2897788..2899607GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g06260Os.54974.1.S1_at11/116+2897788..2899607GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g06270OsAffx.15287.1.S1_at11/116+2899816..2900142hypothetical protein
LOC_Os06g06280Os.11577.1.S1_a_at11/116+2901284..2906303galactosyltransferase family protein, putative, expressed
LOC_Os06g06280OsAffx.8676.1.S1_at1/116+2901284..2906303galactosyltransferase family protein, putative, expressed
LOC_Os06g06290Os.12029.1.S1_a_at10/116+2907034..2909907GDSL-like Lipase/Acylhydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54974.1.S1_at--668--2211Chr06:2898946..2898970 (25 bp)
ACAACGCGCTGCTGCAGGCGAGGCT
LOC_Os06g06260
Os.54974.1.S1_at--240--9331Chr06:2898970..2898994 (25 bp)
TCGCCGGACTCCAGGCCAGGTACAG
LOC_Os06g06260
Os.54974.1.S1_at--619--1991Chr06:2898977..2899001 (25 bp)
ACTCCAGGCCAGGTACAGGTCGGCG
LOC_Os06g06260
Os.54974.1.S1_at--1000--4131Chr06:2899081..2899204 (25 bp)
CGCGCTTCGGGTTCAGGAGCGGGAT
LOC_Os06g06260
Os.54974.1.S1_at--542--7651Chr06:2899231..2899255 (25 bp)
GGGAGTACAACTACGAGTTCGAGGC
LOC_Os06g06260
Os.54974.1.S1_at--956--7011Chr06:2899235..2899259 (25 bp)
GTACAACTACGAGTTCGAGGCGCGG
LOC_Os06g06260
Os.54974.1.S1_at--1006--8831Chr06:2899513..2899537 (25 bp)
TGATCCAAGTCAAGTGTAGCCGCAG
LOC_Os06g06260
Os.54974.1.S1_at--170--4391Chr06:2899517..2899541 (25 bp)
CCAAGTCAAGTGTAGCCGCAGAACG
LOC_Os06g06260
Os.54974.1.S1_at--797--1651Chr06:2899530..2899554 (25 bp)
AGCCGCAGAACGAACTGCAAATTTG
LOC_Os06g06260
Os.54974.1.S1_at--602--3851Chr06:2899544..2899568 (25 bp)
CTGCAAATTTGCAAAATCGATATGG
LOC_Os06g06260
Os.54974.1.S1_at--993--3111Chr06:2899582..2899606 (25 bp)
AATTAGTCCGTACTAATTGGACACT
LOC_Os06g06260
Target Sequence 
ACAACGCGCTGCTGCAGGCGAGGCTCGCCGGACTCCAGGCCAGGTACAGGTCGGCGGCGGCGGCGGCGCCGGCGCCGGTG
AGGATCATGTACGCCGACTACTACACCATGGTCGCCCAGATGCTGCACACGCCGGCGCGCTTCGGGTTCAGGAGCGGGAT
GACGGCGTGCTGCGGCGCCGGCGGCGGGGAGTACAACTACGAGTTCGAGGCGCGGTGCGGGATGAAGGGCGCGGCGGCGT
GCCGTGACCCGTCGAGGCACGTGTGCTGGGACGGCGTCCACACGACGGAGGCGGCGAACCGGCTCGTCGCCGGCGGCTGG
CTCAGGGGACCCTACTGCCACCCTCCCATCCTGCACCACTAGAACCATCGATCAACTGCACCACCTGCCGCCGCCATGGA
TGGATGCATGAACCAAACCAAGAAAACACTAGGCTTAATTAATAATCAATCAATTAATCATCATCTCTTGATCCAAGTCA
AGTGTAGCCGCAGAACGAACTGCAAATTTGCAAAATCGATATGGAAGAAATGATTTTAATTAGTCCGTACTAATTGGACA
CT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54974.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis