Browse Element(s) Details


OsAffx.15286.1.S1_at

Description tigr:9634.m00551
TID=OsAffx.15286.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0624011/11hypothetical protein
LOC_Os05g250702/11expressed protein
LOC_Os07g442102/11SNF2 domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g06170OsAffx.27469.1.S1_at11/116+2858872..2860407expressed protein
LOC_Os06g06180OsAffx.15284.1.S1_at11/116+2860701..2862180Transferase family protein, expressed
LOC_Os06g06190Os.17072.1.S1_at11/116+2862463..2866679ATPase, putative, expressed
LOC_Os06g06190Os.9035.1.S1_at1/116+2862463..2866679ATPase, putative, expressed
LOC_Os06g06200NANA6+2869178..2871701retrotransposon protein, putative, LINE subclass
LOC_Os06g06210Os.14672.1.S2_at11/116+2873385..2876068expressed protein
LOC_Os06g06210Os.14672.1.S1_at10/116+2873385..2876068expressed protein
LOC_Os06g06220OsAffx.4739.1.S1_at11/116+2876441..2876707hypothetical protein
LOC_Os06g06230OsAffx.15285.1.S1_at10/116+2882907..2883915GDSL-motif lipase/hydrolase family protein, putative
LOC_Os06g06240OsAffx.15286.1.S1_at11/116+2885336..2886343hypothetical protein
LOC_Os06g06240OsAffx.15286.1.S1_x_at11/116+2885336..2886343hypothetical protein
LOC_Os06g06250Os.10772.1.S1_x_at11/116+2892695..2894828GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g06250Os.10772.1.S1_at11/116+2892695..2894828GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g06260Os.54974.1.S1_x_at11/116+2897788..2899607GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g06260Os.54974.1.S1_at11/116+2897788..2899607GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g06270OsAffx.15287.1.S1_at11/116+2899816..2900142hypothetical protein
LOC_Os06g06280Os.11577.1.S1_a_at11/116+2901284..2906303galactosyltransferase family protein, putative, expressed
LOC_Os06g06280OsAffx.8676.1.S1_at1/116+2901284..2906303galactosyltransferase family protein, putative, expressed
LOC_Os06g06290Os.12029.1.S1_a_at10/116+2907034..2909907GDSL-like Lipase/Acylhydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006333biological_processchromatin assembly or disassembly
GO:0003677molecular_functionDNA binding
GO:0003682molecular_functionchromatin binding
GO:0004386molecular_functionhelicase activity
GO:0005524molecular_functionATP binding
GO:0008094molecular_functionDNA-dependent ATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15286.1.S1_at--671--31516Chr11:18448514..18448533 (20 bp)
CACTTTATCTACTCCCAATAAATCA
NONE
OsAffx.15286.1.S1_at--813--2035Chr07:26424026..26424363 (25 bp)
ACTTTATCTACTCCCAATAAATCAT
LOC_Os07g44210
OsAffx.15286.1.S1_at--360--431Chr06:2885381..2885405 (25 bp)
ATCTACTCCCAATAAATCATTCCCT
LOC_Os06g06240
OsAffx.15286.1.S1_at--510--9531Chr06:2885380..2885404 (25 bp)
TCTACTCCCAATAAATCATTCCCTA
LOC_Os06g06240
OsAffx.15286.1.S1_at--1008--9891Chr06:2885378..2885402 (25 bp)
TACTCCCAATAAATCATTCCCTACT
LOC_Os06g06240
OsAffx.15286.1.S1_at--1044--1991Chr06:2885377..2885401 (25 bp)
ACTCCCAATAAATCATTCCCTACTT
LOC_Os06g06240
OsAffx.15286.1.S1_at--333--3351Chr06:2885376..2885400 (25 bp)
CTCCCAATAAATCATTCCCTACTTT
LOC_Os06g06240
OsAffx.15286.1.S1_at--501--9231Chr06:2885375..2885399 (25 bp)
TCCCAATAAATCATTCCCTACTTTC
LOC_Os06g06240
OsAffx.15286.1.S1_at--1143--3671Chr06:2885374..2885398 (25 bp)
CCCAATAAATCATTCCCTACTTTCA
LOC_Os06g06240
OsAffx.15286.1.S1_at--592--4371Chr06:2885373..2885397 (25 bp)
CCAATAAATCATTCCCTACTTTCAT
LOC_Os06g06240
OsAffx.15286.1.S1_at--284--431Chr06:2885366..2885390 (25 bp)
ATCATTCCCTACTTTCATAAATTCC
LOC_Os06g06240
Target Sequence 
CACTTTATCTACTCCCAATAAATCATTCCCTACTTTCATAAATTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15286.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis