Browse Element(s) Details


OsAffx.15284.1.S1_at

Description tigr:9634.m00545
TID=OsAffx.15284.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=elicitor inducible gene product EIG-I24
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0618011/11Transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g06130OsAffx.15282.1.S1_at10/116+2835447..2840617Receptor family ligand binding region containing protein
LOC_Os06g06140OsAffx.15283.1.S1_at11/116+2844575..2844820hypothetical protein
LOC_Os06g06150NANA6+2847748..2848341Zinc finger, C3HC4 type family protein
LOC_Os06g06160Os.10766.1.A1_at11/116+2854454..2858561calmodulin-binding family protein, putative, expressed
LOC_Os06g06170OsAffx.27469.1.S1_at11/116+2858872..2860407expressed protein
LOC_Os06g06180OsAffx.15284.1.S1_at11/116+2860701..2862180Transferase family protein, expressed
LOC_Os06g06190Os.17072.1.S1_at11/116+2862463..2866679ATPase, putative, expressed
LOC_Os06g06190Os.9035.1.S1_at1/116+2862463..2866679ATPase, putative, expressed
LOC_Os06g06200NANA6+2869178..2871701retrotransposon protein, putative, LINE subclass
LOC_Os06g06210Os.14672.1.S2_at11/116+2873385..2876068expressed protein
LOC_Os06g06210Os.14672.1.S1_at10/116+2873385..2876068expressed protein
LOC_Os06g06220OsAffx.4739.1.S1_at11/116+2876441..2876707hypothetical protein
LOC_Os06g06230OsAffx.15285.1.S1_at10/116+2882907..2883915GDSL-motif lipase/hydrolase family protein, putative
LOC_Os06g06240OsAffx.15286.1.S1_at11/116+2885336..2886343hypothetical protein
LOC_Os06g06240OsAffx.15286.1.S1_x_at11/116+2885336..2886343hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15284.1.S1_at--646--2691Chr06:2861361..2861385 (25 bp)
AAGCTCACAACGTTCGAGTTCCTCG
LOC_Os06g06180
OsAffx.15284.1.S1_at--631--491Chr06:2861240..2861352 (25 bp)
ATCTGGCGCGCCAGGACGAAAGCCA
LOC_Os06g06180
OsAffx.15284.1.S1_at--115--4111Chr06:2861224..2861248 (25 bp)
CGAAAGCCAGAAGGACGAGCCCCGA
LOC_Os06g06180
OsAffx.15284.1.S1_at--567--6151Chr06:2861198..2861222 (25 bp)
GAGGTCGTGAAGATGGTGTACTCCA
LOC_Os06g06180
OsAffx.15284.1.S1_at--544--7751Chr06:2861184..2861208 (25 bp)
GGTGTACTCCATGAACATCAGCAAG
LOC_Os06g06180
OsAffx.15284.1.S1_at--921--8211Chr06:2861126..2861150 (25 bp)
GGCAACGTGTGCGTCCCAGTGTACG
LOC_Os06g06180
OsAffx.15284.1.S1_at--770--8691Chr06:2861119..2861143 (25 bp)
TGTGCGTCCCAGTGTACGTCGCCCT
LOC_Os06g06180
OsAffx.15284.1.S1_at--327--1851Chr06:2861020..2861044 (25 bp)
ACGACGAGTACGTCCGATCCTACAT
LOC_Os06g06180
OsAffx.15284.1.S1_at--123--1191Chr06:2861014..2861038 (25 bp)
AGTACGTCCGATCCTACATCGACTT
LOC_Os06g06180
OsAffx.15284.1.S1_at--387--3831Chr06:2860871..2860895 (25 bp)
CTGCCGCTCTCGTGGAGGCTGCTCG
LOC_Os06g06180
OsAffx.15284.1.S1_at--356--6331Chr06:2860731..2860755 (25 bp)
GATGCAGGAGCTATCGTTGCAACGC
LOC_Os06g06180
Target Sequence 
AAGCTCACAACGTTCGAGTTCCTCGCCGCGTTCATCTGGCGCGCCAGGACGAAAGCCAGAAGGACGAGCCCCGACGAGGT
CGTGAAGATGGTGTACTCCATGAACATCAGCAAGCTCCTCACGCCGCCTCTCCCGGACGGCTACTGGGGCAACGTGTGCG
TCCCAGTGTACGTCGCCCTCACCGCCGGCGAGCTCGTCGCCCAGCCGCTCGCGGACACAGCCGCCATGGTCAAGAAGAGC
AAGCAGGAGGTGGACGACGAGTACGTCCGATCCTACATCGACTTCCACGAGCTCCACCGCGGCGGCGGCGTCACGGCGGG
GCGCGGCGTGAGCGCGTTCACCGACTGGCGCCGCCTCGGCCACTCGGAGGTGGACTTCGGGTGGGGCTCGCCGGCGGCCG
TGCTGCCGCTCTCGTGGAGGCTGCTCGGGAGCACGGAGCCGTGCTTCTTCGTGCCGTACGGCGCAGCCGACGAGAGGCGG
CGGCGCGGGTTCAAGGTGTTCGTCGCGGTGCCGGCGATGGCGACGCACTGCTTCAGAGAGGAGATGCAGGAGCTATCGTT
GCAACGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15284.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis