Browse Element(s) Details


Os.10766.1.A1_at

Description gb:AK099462.1
DB_XREF= gi:32984671
TID=Os.10766.1
CNT=29
FEA=FLmRNA
TIER=FL+Stack
STK=10
UG=Os.10766 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013023F20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013023F20, full insert sequence.
FL= gb:AK061616.1 gb:AK099462.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0616011/11calmodulin-binding family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g06120Os.27503.1.A1_a_at11/116+2831491..2835302expressed protein
LOC_Os06g06130OsAffx.15282.1.S1_at10/116+2835447..2840617Receptor family ligand binding region containing protein
LOC_Os06g06140OsAffx.15283.1.S1_at11/116+2844575..2844820hypothetical protein
LOC_Os06g06150NANA6+2847748..2848341Zinc finger, C3HC4 type family protein
LOC_Os06g06160Os.10766.1.A1_at11/116+2854454..2858561calmodulin-binding family protein, putative, expressed
LOC_Os06g06170OsAffx.27469.1.S1_at11/116+2858872..2860407expressed protein
LOC_Os06g06180OsAffx.15284.1.S1_at11/116+2860701..2862180Transferase family protein, expressed
LOC_Os06g06190Os.17072.1.S1_at11/116+2862463..2866679ATPase, putative, expressed
LOC_Os06g06190Os.9035.1.S1_at1/116+2862463..2866679ATPase, putative, expressed
LOC_Os06g06200NANA6+2869178..2871701retrotransposon protein, putative, LINE subclass
LOC_Os06g06210Os.14672.1.S2_at11/116+2873385..2876068expressed protein
LOC_Os06g06210Os.14672.1.S1_at10/116+2873385..2876068expressed protein
LOC_Os06g06220OsAffx.4739.1.S1_at11/116+2876441..2876707hypothetical protein
LOC_Os06g06230OsAffx.15285.1.S1_at10/116+2882907..2883915GDSL-motif lipase/hydrolase family protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10766.1.A1_at--76--5071Chr06:2858046..2858070 (25 bp)
GCAGCATCTCCTCCTGATCAGAAGA
LOC_Os06g06160
Os.10766.1.A1_at--387--2751Chr06:2858067..2858091 (25 bp)
AAGAAACCGGTAGCACTGTCTCCTC
LOC_Os06g06160
Os.10766.1.A1_at--205--1971Chr06:2858081..2858105 (25 bp)
ACTGTCTCCTCCTGATCATAAGAAA
LOC_Os06g06160
Os.10766.1.A1_at--690--2931Chr06:2858157..2858181 (25 bp)
AAGGCAAAGGCAGCTGGTCCTCCAA
LOC_Os06g06160
Os.10766.1.A1_at--1004--2451Chr06:2858227..2858251 (25 bp)
AACAACTAGAGGTTCCTTCGCTCAG
LOC_Os06g06160
Os.10766.1.A1_at--486--4831Chr06:2858246..2858270 (25 bp)
GCTCAGTGTGTAAAATTCGCCGCGA
LOC_Os06g06160
Os.10766.1.A1_at--351--4531Chr06:2858264..2858288 (25 bp)
GCCGCGAAATGGTTACCGCTCATTG
LOC_Os06g06160
Os.10766.1.A1_at--236--6031Chr06:2858408..2858432 (25 bp)
GAGAGGTTGCACACATCTGATGAGA
LOC_Os06g06160
Os.10766.1.A1_at--129--5711Chr06:2858447..2858471 (25 bp)
GACTAGGATTCATTGTTGTGCTGTT
LOC_Os06g06160
Os.10766.1.A1_at--382--271Chr06:2858475..2858499 (25 bp)
ATATGACTTGTGATGTGCCTGCCTA
LOC_Os06g06160
Os.10766.1.A1_at--959--9171Chr06:2858490..2858514 (25 bp)
TGCCTGCCTATATGTTTGAATTGAA
LOC_Os06g06160
Target Sequence 
GCAGCATCTCCTCCTGATCAGAAGAAACCGGTAGCACTGTCTCCTCCTGATCATAAGAAAACCGTAACACCATCTCCTCC
TGATCAAAAGAAACCGGTAGCAAGGGTGCAGAAGGCAAAGGCAGCTGGTCCTCCAAAGGCAAAGCCCAAGGACATGAAAG
GGGGCCAACAGAAGAAGCAACAACAACTAGAGGTTCCTTCGCTCAGTGTGTAAAATTCGCCGCGAAATGGTTACCGCTCA
TTGTATGATACATCTTGTGAAGTTCACTTTTGTTTTTTCTCCCCACTCTTTGTTTCTCTCTTCTTTTTGTTTTTTACAGT
GACATGGAACAAACAAGTGACCAATGTAGAATGTATTTGGTTGAGAGGTTGCACACATCTGATGAGAGTGGCTTTGATTA
GGACTAGGATTCATTGTTGTGCTGTTGTAATATGACTTGTGATGTGCCTGCCTATATGTTTGAATTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10766.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis