Browse Element(s) Details

Os.27503.1.A1_a_at

Description

gb:AK100646.1
DB_XREF= gi:32985855
TID=Os.27503.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.27503 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033024O05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023110L03, full insert sequence.
FL= gb:AK100646.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g06120	11/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g06090	Os.19011.1.S1_at	11/11	6	+	2805544..2811939	Mitogen-activated protein kinase homolog 6, putative, expressed
LOC_Os06g06100	Os.14296.1.S1_at	3/11	6	+	2814948..2816061	Dihydroneopterin aldolase, putative, expressed
LOC_Os06g06110	OsAffx.22940.2.S1_s_at	11/11	6	+	2817136..2824572	transposon protein, putative, Mutator sub-class
LOC_Os06g06110	Os.35344.3.S1_x_at	9/11	6	+	2817136..2824572	transposon protein, putative, Mutator sub-class
LOC_Os06g06110	OsAffx.22940.3.S1_x_at	9/11	6	+	2817136..2824572	transposon protein, putative, Mutator sub-class
LOC_Os06g06110	Os.35344.18.S1_x_at	9/11	6	+	2817136..2824572	transposon protein, putative, Mutator sub-class
LOC_Os06g06110	OsAffx.22940.5.S1_x_at	8/11	6	+	2817136..2824572	transposon protein, putative, Mutator sub-class
LOC_Os06g06110	OsAffx.22940.2.S1_at	8/11	6	+	2817136..2824572	transposon protein, putative, Mutator sub-class
LOC_Os06g06110	OsAffx.22940.1.S1_s_at	7/11	6	+	2817136..2824572	transposon protein, putative, Mutator sub-class
LOC_Os06g06110	OsAffx.22940.5.S1_at	1/11	6	+	2817136..2824572	transposon protein, putative, Mutator sub-class
LOC_Os06g06110	OsAffx.31552.2.S1_at	1/11	6	+	2817136..2824572	transposon protein, putative, Mutator sub-class
LOC_Os06g06120	Os.27503.1.A1_a_at	11/11	6	+	2831491..2835302	expressed protein
LOC_Os06g06130	OsAffx.15282.1.S1_at	10/11	6	+	2835447..2840617	Receptor family ligand binding region containing protein
LOC_Os06g06140	OsAffx.15283.1.S1_at	11/11	6	+	2844575..2844820	hypothetical protein
LOC_Os06g06150	NA	NA	6	+	2847748..2848341	Zinc finger, C3HC4 type family protein
LOC_Os06g06160	Os.10766.1.A1_at	11/11	6	+	2854454..2858561	calmodulin-binding family protein, putative, expressed
LOC_Os06g06170	OsAffx.27469.1.S1_at	11/11	6	+	2858872..2860407	expressed protein

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.27503.1.A1_a_at--187--87	1	Chr06:2834827..2834851 (25 bp)	ATGGCCGAGGCCAGTAGCAGCTTTA	LOC_Os06g06120
Os.27503.1.A1_a_at--417--155	1	Chr06:2834845..2834869 (25 bp)	AGCTTTACCGGCTCTGATCTTACAA	LOC_Os06g06120
Os.27503.1.A1_a_at--57--591	1	Chr06:2834879..2834903 (25 bp)	GAGCTGCCAATTCAGGTGGATCCGA	LOC_Os06g06120
Os.27503.1.A1_a_at--805--55	1	Chr06:2834898..2834922 (25 bp)	ATCCGACACTGGTGCTGGCAGTATT	LOC_Os06g06120
Os.27503.1.A1_a_at--226--249	1	Chr06:2834939..2834963 (25 bp)	AACAGATGATGCTGGCCATGGCTCT	LOC_Os06g06120
Os.27503.1.A1_a_at--113--87	1	Chr06:2834956..2834980 (25 bp)	ATGGCTCTTTCGTTGGCTGATGCTC	LOC_Os06g06120
Os.27503.1.A1_a_at--489--291	1	Chr06:2834986..2835010 (25 bp)	AAGGCTAGTTCTCCAGGGCTAACTT	LOC_Os06g06120
Os.27503.1.A1_a_at--1006--1021	1	Chr06:2835034..2835058 (25 bp)	TATTCTTTAGCTGGGTCGTGTTTGT	LOC_Os06g06120
Os.27503.1.A1_a_at--808--207	1	Chr06:2835165..2835189 (25 bp)	ACATTTGCAGTCAGTCTTTGCCCTT	LOC_Os06g06120
Os.27503.1.A1_a_at--1024--1069	1	Chr06:2835182..2835206 (25 bp)	TTGCCCTTTTCTCATGATCTTTTTT	LOC_Os06g06120
Os.27503.1.A1_a_at--1128--137	1	Chr06:2835240..2835264 (25 bp)	AGACCTTCTGTCTGCATACATTGTG	LOC_Os06g06120

Target Sequence

ATGGCCGAGGCCAGTAGCAGCTTTACCGGCTCTGATCTTACAACAGAGGCTGGAGCTGCCAATTCAGGTGGATCCGACAC
TGGTGCTGGCAGTATTCCTGATAGTTTCGAAGAACAGATGATGCTGGCCATGGCTCTTTCGTTGGCTGATGCTCGGGCCA
AGGCTAGTTCTCCAGGGCTAACTTGGCGGTAGCATTTGGCAGTGCTTTATTCTTTAGCTGGGTCGTGTTTGTTTGTTCTT
GTAGTTCCTTTTGTCACATAAAAACATAGGATTAGAGGGGGAACAGATAAGAAAAAAAATCTAGCCTGGATGTTGTGAAT
ATAGTGGGATAAAAATGCACATTTGCAGTCAGTCTTTGCCCTTTTCTCATGATCTTTTTTTTTCTTTCTTCAGAAAGATA
GATTCTGTCAAGCAGACCTTCTGTCTGCATACATTGTG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis