Browse Element(s) Details

Os.19011.1.S1_at

Description

gb:AK111691.1
DB_XREF= gi:37988354
TID=Os.19011.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19011 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) mRNA for mitogen-activated protein kinase (sipk gene)
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023007A05, full insert sequence.
FL= gb:AK111691.1 gb:AK111942.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g06090	11/11	Mitogen-activated protein kinase homolog 6, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g06050	Os.18946.2.S1_at	11/11	6	+	2779789..2784227	F-box/LRR-repeat MAX2 homolog, putative, expressed
LOC_Os06g06050	Os.18946.1.S1_at	11/11	6	+	2779789..2784227	F-box/LRR-repeat MAX2 homolog, putative, expressed
LOC_Os06g06060	NA	NA	6	+	2785775..2789141	retrotransposon protein, putative, unclassified
LOC_Os06g06070	NA	NA	6	+	2790043..2792657	retrotransposon protein, putative, unclassified
LOC_Os06g06080	Os.10381.1.S1_at	11/11	6	+	2802043..2805272	serine esterase family protein, expressed
LOC_Os06g06090	Os.19011.1.S1_at	11/11	6	+	2805544..2811939	Mitogen-activated protein kinase homolog 6, putative, expressed
LOC_Os06g06100	Os.14296.1.S1_at	3/11	6	+	2814948..2816061	Dihydroneopterin aldolase, putative, expressed
LOC_Os06g06110	OsAffx.22940.2.S1_s_at	11/11	6	+	2817136..2824572	transposon protein, putative, Mutator sub-class
LOC_Os06g06110	Os.35344.3.S1_x_at	9/11	6	+	2817136..2824572	transposon protein, putative, Mutator sub-class
LOC_Os06g06110	OsAffx.22940.3.S1_x_at	9/11	6	+	2817136..2824572	transposon protein, putative, Mutator sub-class
LOC_Os06g06110	Os.35344.18.S1_x_at	9/11	6	+	2817136..2824572	transposon protein, putative, Mutator sub-class
LOC_Os06g06110	OsAffx.22940.5.S1_x_at	8/11	6	+	2817136..2824572	transposon protein, putative, Mutator sub-class
LOC_Os06g06110	OsAffx.22940.2.S1_at	8/11	6	+	2817136..2824572	transposon protein, putative, Mutator sub-class
LOC_Os06g06110	OsAffx.22940.1.S1_s_at	7/11	6	+	2817136..2824572	transposon protein, putative, Mutator sub-class
LOC_Os06g06110	OsAffx.22940.5.S1_at	1/11	6	+	2817136..2824572	transposon protein, putative, Mutator sub-class
LOC_Os06g06110	OsAffx.31552.2.S1_at	1/11	6	+	2817136..2824572	transposon protein, putative, Mutator sub-class
LOC_Os06g06120	Os.27503.1.A1_a_at	11/11	6	+	2831491..2835302	expressed protein
LOC_Os06g06130	OsAffx.15282.1.S1_at	10/11	6	+	2835447..2840617	Receptor family ligand binding region containing protein

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Gene Ontology Classification

GO id	Type	Name
GO:0000169	biological_process	activation of MAPK activity during osmolarity sensing
GO:0000302	biological_process	response to reactive oxygen species
GO:0006950	biological_process	response to stress
GO:0006970	biological_process	response to osmotic stress
GO:0006979	biological_process	response to oxidative stress
GO:0007165	biological_process	signal transduction
GO:0009607	biological_process	response to biotic stimulus
GO:0009723	biological_process	response to ethylene stimulus
GO:0009738	biological_process	abscisic acid mediated signaling
GO:0009862	biological_process	systemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009868	biological_process	jasmonic acid and ethylene-dependent systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200	biological_process	response to chitin
GO:0016310	biological_process	phosphorylation
GO:0042830	biological_process	defense response to pathogenic bacteria
GO:0005634	cellular_component	nucleus
GO:0005737	cellular_component	cytoplasm
GO:0004672	molecular_function	protein kinase activity
GO:0004707	molecular_function	MAP kinase activity
GO:0005515	molecular_function	protein binding
GO:0016301	molecular_function	kinase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.19011.1.S1_at--1126--365	1	Chr06:2806080..2806104 (25 bp)	CTTCAGCTTTGACTTCGAGCAGCAT	LOC_Os06g06090
Os.19011.1.S1_at--861--593	1	Chr06:2806064..2806088 (25 bp)	GAGCAGCATGCATTGTCCGAGGAAC	LOC_Os06g06090
Os.19011.1.S1_at--664--1063	1	Chr06:2806009..2806033 (25 bp)	TTGCGTTCAACCCTGATTACCAGTA	LOC_Os06g06090
Os.19011.1.S1_at--14--391	1	Chr06:2805983..2806007 (25 bp)	CTGGTGTTCTATTTCAGCCTTGGAT	LOC_Os06g06090
Os.19011.1.S1_at--606--27	1	Chr06:2805947..2805971 (25 bp)	ATATGGAGTTTTTTCCTCCTGCGCC	LOC_Os06g06090
Os.19011.1.S1_at--200--289	1	Chr06:2805918..2805942 (25 bp)	AAGGTCGCCGACAGTGATCACTAGT	LOC_Os06g06090
Os.19011.1.S1_at--837--663	1	Chr06:2805895..2805919 (25 bp)	GTTGTAAATAATTGCCTCACCTGAA	LOC_Os06g06090
Os.19011.1.S1_at--298--785	1	Chr06:2805800..2805824 (25 bp)	GGTAGCTGCTATGCCATTCTTATGC	LOC_Os06g06090
Os.19011.1.S1_at--1120--573	1	Chr06:2805691..2805715 (25 bp)	GACGGCCTAAATTCTGCGGTTATCA	LOC_Os06g06090
Os.19011.1.S1_at--1005--315	1	Chr06:2805663..2805687 (25 bp)	AATTCCCCATTTTCTTGTCGATTCA	LOC_Os06g06090
Os.19011.1.S1_at--560--571	1	Chr06:2805572..2805596 (25 bp)	GACTCTTGATTCAGTGGTGGCAGTT	LOC_Os06g06090

Target Sequence

CTTCAGCTTTGACTTCGAGCAGCATGCATTGTCCGAGGAACAAATGAAGGATCTAATCTACCAAGAAGGCCTTGCGTTCA
ACCCTGATTACCAGTAGCTGGTGTTCTATTTCAGCCTTGGATTGATTCTATTCATATGGAGTTTTTTCCTCCTGCGCCAC
AAAAGGTCGCCGACAGTGATCACTAGTTGTAAATAATTGCCTCACCTGAAAAATCCTCCCTGGNTTCAAAGCTGAAGGTG
TTGTTCTAAGAGTAGAAATGTACTTTGTGATCAAGTTCCTGGGTAGCTGCTATGCCATTCTTATGCTTATGTATGTTGTT
TAATGTGGGATTTTTTTCCATCTTAAATGTTTTTAGTCCCTTTTGTAAGAAGAGTTAGTTCATGAACGATGACGGCCTAA
ATTCTGCGGTTATCATCAAATTCCCCATTTTCTTGTCGATTCATGGATTTCTCATGGTTTTACTTAATGCTCCATGTTGT
AAGACGTGGTCAATGGAAGAGGATATATTGACTCTTGATTCAGTGGTGGCAGTT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis