Browse Element(s) Details

Os.18946.2.S1_at

Description

gb:AK107102.1
DB_XREF= gi:32992311
TID=Os.18946.2
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18946 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-122-A05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-122-A05, full insert sequence.
FL= gb:AK107102.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g06050	11/11	F-box/LRR-repeat MAX2 homolog, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g06000	OsAffx.4737.1.S1_at	11/11	6	+	2758259..2761128	hypothetical protein
LOC_Os06g06014	Os.10264.1.S1_at	11/11	6	+	2765148..2769430	expressed protein
LOC_Os06g06014	OsAffx.15280.1.S1_at	11/11	6	+	2765148..2769430	expressed protein
LOC_Os06g06014	Os.10264.2.S1_at	10/11	6	+	2765148..2769430	expressed protein
LOC_Os06g06030	Os.10995.1.S1_at	11/11	6	+	2770074..2773038	Proteasome subunit beta type 5 precursor, putative, expressed
LOC_Os06g06040	Os.46439.1.S1_at	11/11	6	+	2773438..2778880	thiol methyltransferase, putative, expressed
LOC_Os06g06040	Os.21058.1.S1_s_at	11/11	6	+	2773438..2778880	thiol methyltransferase, putative, expressed
LOC_Os06g06040	OsAffx.15281.1.S1_at	9/11	6	+	2773438..2778880	thiol methyltransferase, putative, expressed
LOC_Os06g06050	Os.18946.2.S1_at	11/11	6	+	2779789..2784227	F-box/LRR-repeat MAX2 homolog, putative, expressed
LOC_Os06g06050	Os.18946.1.S1_at	11/11	6	+	2779789..2784227	F-box/LRR-repeat MAX2 homolog, putative, expressed
LOC_Os06g06060	NA	NA	6	+	2785775..2789141	retrotransposon protein, putative, unclassified
LOC_Os06g06070	NA	NA	6	+	2790043..2792657	retrotransposon protein, putative, unclassified
LOC_Os06g06080	Os.10381.1.S1_at	11/11	6	+	2802043..2805272	serine esterase family protein, expressed
LOC_Os06g06090	Os.19011.1.S1_at	11/11	6	+	2805544..2811939	Mitogen-activated protein kinase homolog 6, putative, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006511	biological_process	ubiquitin-dependent protein catabolism
GO:0007568	biological_process	aging
GO:0009414	biological_process	response to water deprivation
GO:0009934	biological_process	regulation of meristem organization
GO:0016567	biological_process	protein ubiquitination
GO:0000151	cellular_component	ubiquitin ligase complex
GO:0019005	cellular_component	SCF ubiquitin ligase complex
GO:0004842	molecular_function	ubiquitin-protein ligase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.18946.2.S1_at--131--611	1	Chr06:2782075..2782099 (25 bp)	GAGTCGTGTGTATTGCTGCAGTGCC	LOC_Os06g06050
Os.18946.2.S1_at--842--911	1	Chr06:2782088..2782112 (25 bp)	TGCTGCAGTGCCATTGAGGAGAGTA	LOC_Os06g06050
Os.18946.2.S1_at--509--689	1	Chr06:2782113..2782137 (25 bp)	GTATACTGGCAGCACTTGGATCTGT	LOC_Os06g06050
Os.18946.2.S1_at--511--797	1	Chr06:2782130..2782154 (25 bp)	GGATCTGTCAGCAAAGTAACCTTCT	LOC_Os06g06050
Os.18946.2.S1_at--333--859	1	Chr06:2782288..2782312 (25 bp)	TGGTCTGAGTTGTGAACACCGGCAA	LOC_Os06g06050
Os.18946.2.S1_at--220--3	1	Chr06:2782326..2782350 (25 bp)	ATTGGCATGGTTCTAGCGGTTTGTA	LOC_Os06g06050
Os.18946.2.S1_at--270--467	1	Chr06:2782341..2782365 (25 bp)	GCGGTTTGTAACATTTGAACTCTGT	LOC_Os06g06050
Os.18946.2.S1_at--68--61	1	Chr06:2782397..2782421 (25 bp)	ATGCCCTTTGCTTCATGGGTGAAAG	LOC_Os06g06050
Os.18946.2.S1_at--887--287	1	Chr06:2782419..2782443 (25 bp)	AAGTGGCTCATCTAATATTGGTCAG	LOC_Os06g06050
Os.18946.2.S1_at--183--1035	1	Chr06:2782447..2782471 (25 bp)	TTTACTGTTTTCAATGGATGGGCAA	LOC_Os06g06050
Os.18946.2.S1_at--864--79	1	Chr06:2782464..2782488 (25 bp)	ATGGGCAACGGAGTTCAGTACTACT	LOC_Os06g06050

Target Sequence

GAGTCGTGTGTATTGCTGCAGTGCCATTGAGGAGAGTAGTATACTGGCAGCACTTGGATCTGTCAGCAAAGTAACCTTCT
CCAGTTGCTTTTTTACCCCCTTTTTGATGTAATAAGAGAGTTGGGTCGGAAATGAGATATTTGCAGGAGATAAGATTATA
AATTAGGCTTCATGGAAAATTTTCCAAGAAAAAAAAACATTTTGTTTTTAAGATGGTCTGAGTTGTGAACACCGGCAAGA
GTAATTGGCAAATTGGCATGGTTCTAGCGGTTTGTAACATTTGAACTCTGTAAACAAAAGAAAAACGCCACTCGCTTTTC
TTATGCCCTTTGCTTCATGGGTGAAAGTGGCTCATCTAATATTGGTCAGTGTTTTACTGTTTTCAATGGATGGGCAACGG
AGTTCAGTACTACT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis